Should you encounter any unexpected behaviour,
please let us know.
Overall B-factor prediction
%Bfactors-Wn> Experimental B-factors are nearly constant !
Residue-by-residue B-factor prediction for CA atoms
B-factors are computed based on the first 100 normal modes (B-PREDICT)
and are scaled to match the overall B-factors in the submitted model (B-SCALED).
A high correlation with the observations is an indicator that the normal modes capture well the
overall flexibility features of the model.
Comparison of the observed (B-OBS, blue) and the
computed (B-SCALED, red) B-factors for
all C-alpha atoms is presented below.
Differences between B-factors from normal mode analysis
and from X-ray crystallographic data may for example indicate regions where
the protein flexibility is modified due to external factors such as
ATOM TYP RES RESID B-PREDICT B-SCALED B-OBS
2 CA CYS 19 0.6498 0.0000 0.0000
8 CA ARG 20 0.1088 0.0000 0.0000
19 CA MET 21 0.1989 0.0000 0.0000
27 CA ASN 22 0.2089 0.0000 0.0000
35 CA SER 23 0.1797 0.0000 0.0000
41 CA ARG 24 0.1101 0.0000 0.0000
52 CA ASN 25 0.0965 0.0000 0.0000
If you find results from this site helpful for your research, please cite one of our papers:
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.