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***  HYDROLASE/HYDROLASE INHIBITOR 29-OCT-17 5YOK  ***

Normal Mode Analysis for ID 21062218281741693

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 1 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.2998
mode 8 1.07 0.4190
mode 9 1.25 0.0634
mode 10 1.47 0.3200
mode 11 1.63 0.1989
mode 12 1.75 0.0887
mode 13 1.84 0.3238
mode 14 1.96 0.5314
mode 15 2.01 0.5108
mode 16 2.13 0.3856
mode 17 2.21 0.4207
mode 18 2.32 0.1565
mode 19 2.36 0.1706
mode 20 2.45 0.1132
mode 21 2.50 0.0897
mode 22 2.58 0.3233
mode 23 2.63 0.4251
mode 24 2.73 0.2715
mode 25 2.77 0.5894
mode 26 2.80 0.3668
mode 27 2.89 0.4483
mode 28 3.01 0.3819
mode 29 3.04 0.3845
mode 30 3.11 0.4227
mode 31 3.17 0.3709
mode 32 3.25 0.1922
mode 33 3.26 0.3782
mode 34 3.28 0.1399
mode 35 3.32 0.5002
mode 36 3.36 0.2108
mode 37 3.39 0.3294
mode 38 3.41 0.1017
mode 39 3.51 0.3739
mode 40 3.53 0.2993
mode 41 3.60 0.4009
mode 42 3.63 0.3812
mode 43 3.67 0.3370
mode 44 3.74 0.2077
mode 45 3.75 0.4552
mode 46 3.82 0.2708
mode 47 3.88 0.5011
mode 48 3.90 0.2694
mode 49 3.95 0.4903
mode 50 3.96 0.3617
mode 51 4.02 0.2377
mode 52 4.04 0.4957
mode 53 4.06 0.3314
mode 54 4.10 0.3624
mode 55 4.14 0.3908
mode 56 4.16 0.3687
mode 57 4.19 0.3019
mode 58 4.21 0.3713
mode 59 4.22 0.4040
mode 60 4.24 0.4163
mode 61 4.27 0.3575
mode 62 4.30 0.4086
mode 63 4.33 0.3231
mode 64 4.36 0.2775
mode 65 4.38 0.3744
mode 66 4.39 0.1813
mode 67 4.41 0.3166
mode 68 4.45 0.2458
mode 69 4.47 0.3300
mode 70 4.50 0.3026
mode 71 4.51 0.3253
mode 72 4.52 0.4218
mode 73 4.58 0.4480
mode 74 4.58 0.1813
mode 75 4.63 0.3794
mode 76 4.64 0.3161
mode 77 4.69 0.4159
mode 78 4.72 0.4365
mode 79 4.76 0.2958
mode 80 4.79 0.2267
mode 81 4.80 0.2377
mode 82 4.85 0.3552
mode 83 4.86 0.4539
mode 84 4.90 0.3517
mode 85 4.92 0.4009
mode 86 4.92 0.4597
mode 87 4.94 0.3268
mode 88 4.97 0.4389
mode 89 4.98 0.4013
mode 90 4.99 0.3510
mode 91 5.06 0.2597
mode 92 5.08 0.3899
mode 93 5.09 0.3013
mode 94 5.10 0.4040
mode 95 5.17 0.4604
mode 96 5.19 0.3541
mode 97 5.21 0.3820
mode 98 5.23 0.4777
mode 99 5.25 0.3757
mode 100 5.29 0.3230
mode 101 5.29 0.3886
mode 102 5.31 0.3631
mode 103 5.34 0.2519
mode 104 5.37 0.2661
mode 105 5.39 0.3491
mode 106 5.41 0.2162

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.