CNRS Nantes University UFIP UFIP
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.


***  teste-proteina-NDX-OLC  ***

Normal Mode Analysis for ID 210530024804147006

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 5 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0037
mode 8 1.08 0.0037
mode 9 1.17 0.0021
mode 10 1.42 0.0021
mode 11 1.59 0.0031
mode 12 1.65 0.0022
mode 13 1.75 0.0078
mode 14 1.80 0.0048
mode 15 1.88 0.0062
mode 16 2.09 0.0047
mode 17 2.14 0.0237
mode 18 2.34 0.0100
mode 19 2.40 0.0133
mode 20 2.51 0.0410
mode 21 2.53 0.0145
mode 22 2.57 0.0287
mode 23 2.62 0.1569
mode 24 2.73 0.0123
mode 25 2.75 0.0128
mode 26 2.79 0.0187
mode 27 2.81 0.0087
mode 28 2.89 0.0478
mode 29 2.92 0.0201
mode 30 2.95 0.0724
mode 31 2.99 0.0145
mode 32 3.11 0.0071
mode 33 3.18 0.0897
mode 34 3.26 0.0363
mode 35 3.33 0.0739
mode 36 3.41 0.2926
mode 37 3.48 0.0477
mode 38 3.57 0.2467
mode 39 3.67 0.0616
mode 40 3.77 0.0191
mode 41 3.80 0.0467
mode 42 3.85 0.0085
mode 43 3.89 0.0290
mode 44 3.94 0.0359
mode 45 3.98 0.0541
mode 46 4.07 0.0570
mode 47 4.21 0.0437
mode 48 4.24 0.2236
mode 49 4.35 0.2764
mode 50 4.44 0.1224
mode 51 4.52 0.4471
mode 52 4.61 0.3519
mode 53 4.65 0.1245
mode 54 4.82 0.1199
mode 55 4.86 0.1591
mode 56 4.99 0.1032
mode 57 5.05 0.2320
mode 58 5.08 0.2659
mode 59 5.14 0.3095
mode 60 5.25 0.3638
mode 61 5.39 0.1224
mode 62 5.42 0.2159
mode 63 5.57 0.2251
mode 64 5.61 0.2262
mode 65 5.70 0.3143
mode 66 5.78 0.4127
mode 67 5.81 0.1791
mode 68 5.83 0.3262
mode 69 5.95 0.2200
mode 70 6.02 0.4329
mode 71 6.09 0.1780
mode 72 6.11 0.2222
mode 73 6.19 0.2199
mode 74 6.20 0.4676
mode 75 6.24 0.3895
mode 76 6.33 0.3087
mode 77 6.47 0.3792
mode 78 6.51 0.2579
mode 79 6.55 0.2765
mode 80 6.62 0.2203
mode 81 6.67 0.1700
mode 82 6.72 0.2436
mode 83 6.76 0.1645
mode 84 6.86 0.1359
mode 85 6.90 0.2903
mode 86 6.93 0.3725
mode 87 6.98 0.2885
mode 88 7.03 0.4138
mode 89 7.07 0.1813
mode 90 7.07 0.2951
mode 91 7.13 0.1485
mode 92 7.23 0.2303
mode 93 7.29 0.3897
mode 94 7.33 0.4081
mode 95 7.39 0.3345
mode 96 7.46 0.3134
mode 97 7.47 0.3482
mode 98 7.51 0.2052
mode 99 7.53 0.1127
mode 100 7.56 0.1402
mode 101 7.59 0.2163
mode 102 7.61 0.2538
mode 103 7.64 0.1434
mode 104 7.71 0.3667
mode 105 7.72 0.3417
mode 106 7.80 0.2929

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.