Should you encounter any unexpected behaviour,
please let us know.

* LYMPHOKINE 25-AUG-89 1TNF *

<R²> analysis for 2406080142331607873

--- normal mode 56 ---

This page gives a visualization of the normalized mean square displacement <R²> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

X Y Z residue <R²> <R²>_max = 0.0717
ARG 6 0.0283
THR 7 0.0337
PRO 8 0.0324
SER 9 0.0414
ASP 10 0.0432
LYS 11 0.0322
PRO 12 0.0252
VAL 13 0.0166
ALA 14 0.0104
HIS 15 0.0093
VAL 16 0.0177
VAL 17 0.0233
ALA 18 0.0302
ASN 19 0.0257
PRO 20 0.0263
GLN 21 0.0467
ALA 22 0.0249
GLU 23 0.0567
GLY 24 0.0371
GLN 25 0.0266
LEU 26 0.0256
GLN 27 0.0283
TRP 28 0.0289
LEU 29 0.0295
ASN 30 0.0343
ARG 31 0.0545
ARG 32 0.0451
ALA 33 0.0305
ASN 34 0.0241
ALA 35 0.0231
LEU 36 0.0079
LEU 37 0.0146
ALA 38 0.0255
ASN 39 0.0335
GLY 40 0.0352
VAL 41 0.0282
GLU 42 0.0295
LEU 43 0.0150
ARG 44 0.0262
ASP 45 0.0232
ASN 46 0.0109
GLN 47 0.0048
LEU 48 0.0051
VAL 49 0.0121
VAL 50 0.0119
PRO 51 0.0206
SER 52 0.0191
GLU 53 0.0202
GLY 54 0.0139
LEU 55 0.0107
TYR 56 0.0094
LEU 57 0.0040
ILE 58 0.0036
TYR 59 0.0037
SER 60 0.0082
GLN 61 0.0076
VAL 62 0.0087
LEU 63 0.0070
PHE 64 0.0058
LYS 65 0.0093
GLY 66 0.0126
GLN 67 0.0059
GLY 68 0.0067
CYS 69 0.0042
PRO 70 0.0064
SER 71 0.0068
THR 72 0.0031
HIS 73 0.0050
VAL 74 0.0073
LEU 75 0.0064
LEU 76 0.0057
THR 77 0.0070
HIS 78 0.0073
THR 79 0.0075
ILE 80 0.0074
SER 81 0.0134
ARG 82 0.0121
ILE 83 0.0164
ALA 84 0.0237
VAL 85 0.0292
SER 86 0.0283
TYR 87 0.0316
GLN 88 0.0465
THR 89 0.0527
LYS 90 0.0225
VAL 91 0.0210
ASN 92 0.0197
LEU 93 0.0065
LEU 94 0.0072
SER 95 0.0087
ALA 96 0.0012
ILE 97 0.0018
LYS 98 0.0012
SER 99 0.0024
PRO 100 0.0033
CYS 101 0.0042
GLN 102 0.0065
ARG 103 0.0057
GLU 104 0.0058
THR 105 0.0137
PRO 106 0.0068
GLU 107 0.0131
GLY 108 0.0295
ALA 109 0.0419
GLU 110 0.0305
ALA 111 0.0115
LYS 112 0.0037
PRO 113 0.0066
TRP 114 0.0094
TYR 115 0.0087
GLU 116 0.0075
PRO 117 0.0059
ILE 118 0.0050
TYR 119 0.0040
LEU 120 0.0033
GLY 121 0.0021
GLY 122 0.0031
VAL 123 0.0047
PHE 124 0.0073
GLN 125 0.0124
LEU 126 0.0128
GLU 127 0.0169
LYS 128 0.0192
GLY 129 0.0084
ASP 130 0.0077
ARG 131 0.0077
LEU 132 0.0063
SER 133 0.0087
ALA 134 0.0135
GLU 135 0.0148
ILE 136 0.0139
ASN 137 0.0158
ARG 138 0.0189
PRO 139 0.0192
ASP 140 0.0182
TYR 141 0.0098
LEU 142 0.0075
LEU 143 0.0096
PHE 144 0.0129
ALA 145 0.0130
GLU 146 0.0153
SER 147 0.0180
GLY 148 0.0170
GLN 149 0.0119
VAL 150 0.0147
TYR 151 0.0133
PHE 152 0.0116
GLY 153 0.0016
ILE 154 0.0045
ILE 155 0.0065
ALA 156 0.0114
LEU 157 0.0053
ARG 6 0.0717
THR 7 0.0394
PRO 8 0.0333
SER 9 0.0221
ASP 10 0.0227
LYS 11 0.0174
PRO 12 0.0144
VAL 13 0.0102
ALA 14 0.0066
HIS 15 0.0055
VAL 16 0.0065
VAL 17 0.0075
ALA 18 0.0087
ASN 19 0.0051
PRO 20 0.0121
GLN 21 0.0418
ALA 22 0.0151
GLU 23 0.0080
GLY 24 0.0075
GLN 25 0.0093
LEU 26 0.0084
GLN 27 0.0066
TRP 28 0.0087
LEU 29 0.0080
ASN 30 0.0067
ARG 31 0.0080
ARG 32 0.0066
ALA 33 0.0090
ASN 34 0.0054
ALA 35 0.0054
LEU 36 0.0065
LEU 37 0.0085
ALA 38 0.0122
ASN 39 0.0169
GLY 40 0.0156
VAL 41 0.0124
GLU 42 0.0119
LEU 43 0.0152
ARG 44 0.0358
ASP 45 0.0172
ASN 46 0.0118
GLN 47 0.0033
LEU 48 0.0035
VAL 49 0.0074
VAL 50 0.0099
PRO 51 0.0131
SER 52 0.0107
GLU 53 0.0085
GLY 54 0.0098
LEU 55 0.0073
TYR 56 0.0070
LEU 57 0.0029
ILE 58 0.0018
TYR 59 0.0021
SER 60 0.0053
GLN 61 0.0054
VAL 62 0.0054
LEU 63 0.0037
PHE 64 0.0024
LYS 65 0.0040
GLY 66 0.0128
GLN 67 0.0152
GLY 68 0.0143
CYS 69 0.0152
PRO 70 0.0209
SER 71 0.0225
THR 72 0.0215
HIS 73 0.0132
VAL 74 0.0098
LEU 75 0.0051
LEU 76 0.0032
THR 77 0.0030
HIS 78 0.0021
THR 79 0.0035
ILE 80 0.0049
SER 81 0.0128
ARG 82 0.0091
ILE 83 0.0107
ALA 84 0.0093
VAL 85 0.0222
SER 86 0.0313
TYR 87 0.0152
GLN 88 0.0197
THR 89 0.0219
LYS 90 0.0133
VAL 91 0.0117
ASN 92 0.0127
LEU 93 0.0069
LEU 94 0.0052
SER 95 0.0048
ALA 96 0.0042
ILE 97 0.0027
LYS 98 0.0018
SER 99 0.0033
PRO 100 0.0062
CYS 101 0.0078
GLN 102 0.0077
ARG 103 0.0097
GLU 104 0.0111
THR 105 0.0184
PRO 106 0.0097
GLU 107 0.0142
GLY 108 0.0206
ALA 109 0.0094
GLU 110 0.0093
ALA 111 0.0080
LYS 112 0.0083
PRO 113 0.0098
TRP 114 0.0061
TYR 115 0.0053
GLU 116 0.0042
PRO 117 0.0030
ILE 118 0.0028
TYR 119 0.0029
LEU 120 0.0018
GLY 121 0.0010
GLY 122 0.0009
VAL 123 0.0027
PHE 124 0.0026
GLN 125 0.0055
LEU 126 0.0041
GLU 127 0.0066
LYS 128 0.0099
GLY 129 0.0078
ASP 130 0.0091
ARG 131 0.0095
LEU 132 0.0054
SER 133 0.0037
ALA 134 0.0014
GLU 135 0.0030
ILE 136 0.0021
ASN 137 0.0029
ARG 138 0.0050
PRO 139 0.0050
ASP 140 0.0062
TYR 141 0.0035
LEU 142 0.0025
LEU 143 0.0052
PHE 144 0.0073
ALA 145 0.0079
GLU 146 0.0075
SER 147 0.0089
GLY 148 0.0093
GLN 149 0.0084
VAL 150 0.0065
TYR 151 0.0059
PHE 152 0.0056
GLY 153 0.0033
ILE 154 0.0052
ILE 155 0.0070
ALA 156 0.0106
LEU 157 0.0089
ARG 6 0.0186
THR 7 0.0193
PRO 8 0.0209
SER 9 0.0182
ASP 10 0.0145
LYS 11 0.0091
PRO 12 0.0089
VAL 13 0.0072
ALA 14 0.0060
HIS 15 0.0036
VAL 16 0.0037
VAL 17 0.0054
ALA 18 0.0088
ASN 19 0.0092
PRO 20 0.0065
GLN 21 0.0119
ALA 22 0.0201
GLU 23 0.0208
GLY 24 0.0121
GLN 25 0.0111
LEU 26 0.0088
GLN 27 0.0078
TRP 28 0.0078
LEU 29 0.0089
ASN 30 0.0053
ARG 31 0.0074
ARG 32 0.0087
ALA 33 0.0050
ASN 34 0.0042
ALA 35 0.0032
LEU 36 0.0080
LEU 37 0.0094
ALA 38 0.0120
ASN 39 0.0158
GLY 40 0.0144
VAL 41 0.0129
GLU 42 0.0123
LEU 43 0.0064
ARG 44 0.0080
ASP 45 0.0103
ASN 46 0.0059
GLN 47 0.0059
LEU 48 0.0044
VAL 49 0.0068
VAL 50 0.0085
PRO 51 0.0165
SER 52 0.0168
GLU 53 0.0159
GLY 54 0.0104
LEU 55 0.0079
TYR 56 0.0040
LEU 57 0.0021
ILE 58 0.0020
TYR 59 0.0016
SER 60 0.0009
GLN 61 0.0025
VAL 62 0.0039
LEU 63 0.0053
PHE 64 0.0049
LYS 65 0.0032
GLY 66 0.0035
GLN 67 0.0034
GLY 68 0.0009
CYS 69 0.0035
PRO 70 0.0077
SER 71 0.0096
THR 72 0.0051
HIS 73 0.0061
VAL 74 0.0079
LEU 75 0.0091
LEU 76 0.0075
THR 77 0.0060
HIS 78 0.0047
THR 79 0.0070
ILE 80 0.0092
SER 81 0.0207
ARG 82 0.0182
ILE 83 0.0146
ALA 84 0.0194
VAL 85 0.0138
SER 86 0.0173
TYR 87 0.0267
GLN 88 0.0092
THR 89 0.0160
LYS 90 0.0210
VAL 91 0.0214
ASN 92 0.0230
LEU 93 0.0141
LEU 94 0.0105
SER 95 0.0088
ALA 96 0.0062
ILE 97 0.0071
LYS 98 0.0082
SER 99 0.0094
PRO 100 0.0079
CYS 101 0.0064
GLN 102 0.0055
ARG 103 0.0039
GLU 104 0.0038
THR 105 0.0063
PRO 106 0.0024
GLU 107 0.0023
GLY 108 0.0119
ALA 109 0.0139
GLU 110 0.0101
ALA 111 0.0026
LYS 112 0.0039
PRO 113 0.0043
TRP 114 0.0017
TYR 115 0.0029
GLU 116 0.0048
PRO 117 0.0049
ILE 118 0.0041
TYR 119 0.0027
LEU 120 0.0041
GLY 121 0.0040
GLY 122 0.0043
VAL 123 0.0063
PHE 124 0.0058
GLN 125 0.0044
LEU 126 0.0110
GLU 127 0.0139
LYS 128 0.0157
GLY 129 0.0067
ASP 130 0.0086
ARG 131 0.0088
LEU 132 0.0099
SER 133 0.0100
ALA 134 0.0078
GLU 135 0.0064
ILE 136 0.0049
ASN 137 0.0068
ARG 138 0.0062
PRO 139 0.0062
ASP 140 0.0052
TYR 141 0.0062
LEU 142 0.0060
LEU 143 0.0051
PHE 144 0.0065
ALA 145 0.0026
GLU 146 0.0048
SER 147 0.0072
GLY 148 0.0066
GLN 149 0.0053
VAL 150 0.0050
TYR 151 0.0038
PHE 152 0.0024
GLY 153 0.0018
ILE 154 0.0019
ILE 155 0.0031
ALA 156 0.0073
LEU 157 0.0055

If you find results from this site helpful for your research, please cite one of our papers:

K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.

Should you encounter any unexpected behaviour, please let us know.

*** LYMPHOKINE 25-AUG-89 1TNF ***

<R2> analysis for 2406080142331607873

--- normal mode 56 ---

Should you encounter any unexpected behaviour,
please let us know.

* LYMPHOKINE 25-AUG-89 1TNF *

<R²> analysis for 2406080142331607873