Should you encounter any unexpected behaviour,
please let us know.

* LYMPHOKINE 25-AUG-89 1TNF *

<R²> analysis for 2406080142331607873

--- normal mode 55 ---

This page gives a visualization of the normalized mean square displacement <R²> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

X Y Z residue <R²> <R²>_max = 0.0588
ARG 6 0.0100
THR 7 0.0075
PRO 8 0.0067
SER 9 0.0021
ASP 10 0.0044
LYS 11 0.0067
PRO 12 0.0037
VAL 13 0.0051
ALA 14 0.0059
HIS 15 0.0051
VAL 16 0.0050
VAL 17 0.0051
ALA 18 0.0050
ASN 19 0.0016
PRO 20 0.0025
GLN 21 0.0093
ALA 22 0.0081
GLU 23 0.0116
GLY 24 0.0053
GLN 25 0.0040
LEU 26 0.0046
GLN 27 0.0056
TRP 28 0.0059
LEU 29 0.0057
ASN 30 0.0070
ARG 31 0.0082
ARG 32 0.0075
ALA 33 0.0050
ASN 34 0.0057
ALA 35 0.0056
LEU 36 0.0059
LEU 37 0.0051
ALA 38 0.0047
ASN 39 0.0016
GLY 40 0.0007
VAL 41 0.0034
GLU 42 0.0066
LEU 43 0.0089
ARG 44 0.0094
ASP 45 0.0081
ASN 46 0.0079
GLN 47 0.0062
LEU 48 0.0053
VAL 49 0.0028
VAL 50 0.0020
PRO 51 0.0040
SER 52 0.0092
GLU 53 0.0134
GLY 54 0.0114
LEU 55 0.0121
TYR 56 0.0120
LEU 57 0.0049
ILE 58 0.0038
TYR 59 0.0046
SER 60 0.0027
GLN 61 0.0026
VAL 62 0.0024
LEU 63 0.0037
PHE 64 0.0049
LYS 65 0.0062
GLY 66 0.0076
GLN 67 0.0134
GLY 68 0.0134
CYS 69 0.0124
PRO 70 0.0118
SER 71 0.0101
THR 72 0.0072
HIS 73 0.0062
VAL 74 0.0067
LEU 75 0.0077
LEU 76 0.0065
THR 77 0.0065
HIS 78 0.0050
THR 79 0.0052
ILE 80 0.0050
SER 81 0.0035
ARG 82 0.0038
ILE 83 0.0024
ALA 84 0.0066
VAL 85 0.0088
SER 86 0.0191
TYR 87 0.0178
GLN 88 0.0150
THR 89 0.0139
LYS 90 0.0040
VAL 91 0.0066
ASN 92 0.0088
LEU 93 0.0057
LEU 94 0.0049
SER 95 0.0048
ALA 96 0.0066
ILE 97 0.0070
LYS 98 0.0064
SER 99 0.0069
PRO 100 0.0077
CYS 101 0.0097
GLN 102 0.0073
ARG 103 0.0057
GLU 104 0.0092
THR 105 0.0086
PRO 106 0.0123
GLU 107 0.0178
GLY 108 0.0115
ALA 109 0.0236
GLU 110 0.0227
ALA 111 0.0121
LYS 112 0.0117
PRO 113 0.0126
TRP 114 0.0063
TYR 115 0.0045
GLU 116 0.0044
PRO 117 0.0033
ILE 118 0.0034
TYR 119 0.0034
LEU 120 0.0021
GLY 121 0.0041
GLY 122 0.0061
VAL 123 0.0077
PHE 124 0.0078
GLN 125 0.0073
LEU 126 0.0084
GLU 127 0.0068
LYS 128 0.0052
GLY 129 0.0014
ASP 130 0.0019
ARG 131 0.0032
LEU 132 0.0033
SER 133 0.0034
ALA 134 0.0034
GLU 135 0.0047
ILE 136 0.0049
ASN 137 0.0050
ARG 138 0.0050
PRO 139 0.0032
ASP 140 0.0039
TYR 141 0.0052
LEU 142 0.0038
LEU 143 0.0039
PHE 144 0.0039
ALA 145 0.0038
GLU 146 0.0036
SER 147 0.0039
GLY 148 0.0041
GLN 149 0.0038
VAL 150 0.0031
TYR 151 0.0037
PHE 152 0.0044
GLY 153 0.0069
ILE 154 0.0062
ILE 155 0.0067
ALA 156 0.0123
LEU 157 0.0150
ARG 6 0.0491
THR 7 0.0309
PRO 8 0.0374
SER 9 0.0348
ASP 10 0.0442
LYS 11 0.0321
PRO 12 0.0127
VAL 13 0.0111
ALA 14 0.0066
HIS 15 0.0080
VAL 16 0.0077
VAL 17 0.0038
ALA 18 0.0026
ASN 19 0.0112
PRO 20 0.0186
GLN 21 0.0517
ALA 22 0.0169
GLU 23 0.0588
GLY 24 0.0232
GLN 25 0.0139
LEU 26 0.0064
GLN 27 0.0115
TRP 28 0.0107
LEU 29 0.0100
ASN 30 0.0200
ARG 31 0.0562
ARG 32 0.0414
ALA 33 0.0330
ASN 34 0.0195
ALA 35 0.0136
LEU 36 0.0055
LEU 37 0.0094
ALA 38 0.0156
ASN 39 0.0225
GLY 40 0.0133
VAL 41 0.0063
GLU 42 0.0172
LEU 43 0.0126
ARG 44 0.0269
ASP 45 0.0160
ASN 46 0.0093
GLN 47 0.0107
LEU 48 0.0082
VAL 49 0.0130
VAL 50 0.0126
PRO 51 0.0142
SER 52 0.0181
GLU 53 0.0202
GLY 54 0.0176
LEU 55 0.0145
TYR 56 0.0060
LEU 57 0.0077
ILE 58 0.0085
TYR 59 0.0105
SER 60 0.0079
GLN 61 0.0058
VAL 62 0.0038
LEU 63 0.0053
PHE 64 0.0068
LYS 65 0.0097
GLY 66 0.0156
GLN 67 0.0151
GLY 68 0.0129
CYS 69 0.0146
PRO 70 0.0173
SER 71 0.0181
THR 72 0.0149
HIS 73 0.0141
VAL 74 0.0117
LEU 75 0.0100
LEU 76 0.0040
THR 77 0.0022
HIS 78 0.0062
THR 79 0.0063
ILE 80 0.0071
SER 81 0.0034
ARG 82 0.0077
ILE 83 0.0077
ALA 84 0.0141
VAL 85 0.0187
SER 86 0.0219
TYR 87 0.0256
GLN 88 0.0232
THR 89 0.0220
LYS 90 0.0044
VAL 91 0.0013
ASN 92 0.0041
LEU 93 0.0081
LEU 94 0.0081
SER 95 0.0082
ALA 96 0.0046
ILE 97 0.0053
LYS 98 0.0053
SER 99 0.0117
PRO 100 0.0109
CYS 101 0.0131
GLN 102 0.0113
ARG 103 0.0107
GLU 104 0.0126
THR 105 0.0193
PRO 106 0.0091
GLU 107 0.0205
GLY 108 0.0288
ALA 109 0.0183
GLU 110 0.0085
ALA 111 0.0119
LYS 112 0.0141
PRO 113 0.0159
TRP 114 0.0124
TYR 115 0.0103
GLU 116 0.0078
PRO 117 0.0045
ILE 118 0.0039
TYR 119 0.0051
LEU 120 0.0082
GLY 121 0.0098
GLY 122 0.0110
VAL 123 0.0117
PHE 124 0.0169
GLN 125 0.0211
LEU 126 0.0162
GLU 127 0.0201
LYS 128 0.0221
GLY 129 0.0165
ASP 130 0.0164
ARG 131 0.0142
LEU 132 0.0104
SER 133 0.0094
ALA 134 0.0094
GLU 135 0.0071
ILE 136 0.0037
ASN 137 0.0050
ARG 138 0.0086
PRO 139 0.0121
ASP 140 0.0114
TYR 141 0.0077
LEU 142 0.0071
LEU 143 0.0071
PHE 144 0.0072
ALA 145 0.0106
GLU 146 0.0094
SER 147 0.0085
GLY 148 0.0078
GLN 149 0.0057
VAL 150 0.0030
TYR 151 0.0056
PHE 152 0.0078
GLY 153 0.0102
ILE 154 0.0080
ILE 155 0.0098
ALA 156 0.0119
LEU 157 0.0130
ARG 6 0.0464
THR 7 0.0487
PRO 8 0.0508
SER 9 0.0413
ASP 10 0.0364
LYS 11 0.0222
PRO 12 0.0129
VAL 13 0.0120
ALA 14 0.0125
HIS 15 0.0140
VAL 16 0.0131
VAL 17 0.0149
ALA 18 0.0120
ASN 19 0.0086
PRO 20 0.0069
GLN 21 0.0098
ALA 22 0.0070
GLU 23 0.0097
GLY 24 0.0089
GLN 25 0.0064
LEU 26 0.0093
GLN 27 0.0104
TRP 28 0.0066
LEU 29 0.0079
ASN 30 0.0145
ARG 31 0.0201
ARG 32 0.0226
ALA 33 0.0290
ASN 34 0.0268
ALA 35 0.0240
LEU 36 0.0238
LEU 37 0.0185
ALA 38 0.0208
ASN 39 0.0204
GLY 40 0.0189
VAL 41 0.0183
GLU 42 0.0327
LEU 43 0.0231
ARG 44 0.0408
ASP 45 0.0474
ASN 46 0.0238
GLN 47 0.0116
LEU 48 0.0098
VAL 49 0.0129
VAL 50 0.0134
PRO 51 0.0159
SER 52 0.0175
GLU 53 0.0130
GLY 54 0.0069
LEU 55 0.0065
TYR 56 0.0066
LEU 57 0.0025
ILE 58 0.0040
TYR 59 0.0070
SER 60 0.0064
GLN 61 0.0048
VAL 62 0.0021
LEU 63 0.0070
PHE 64 0.0084
LYS 65 0.0111
GLY 66 0.0200
GLN 67 0.0197
GLY 68 0.0190
CYS 69 0.0220
PRO 70 0.0263
SER 71 0.0285
THR 72 0.0183
HIS 73 0.0162
VAL 74 0.0202
LEU 75 0.0115
LEU 76 0.0088
THR 77 0.0067
HIS 78 0.0046
THR 79 0.0062
ILE 80 0.0072
SER 81 0.0082
ARG 82 0.0089
ILE 83 0.0109
ALA 84 0.0155
VAL 85 0.0298
SER 86 0.0343
TYR 87 0.0186
GLN 88 0.0353
THR 89 0.0459
LYS 90 0.0087
VAL 91 0.0072
ASN 92 0.0044
LEU 93 0.0043
LEU 94 0.0043
SER 95 0.0044
ALA 96 0.0027
ILE 97 0.0017
LYS 98 0.0048
SER 99 0.0131
PRO 100 0.0151
CYS 101 0.0152
GLN 102 0.0153
ARG 103 0.0164
GLU 104 0.0166
THR 105 0.0304
PRO 106 0.0242
GLU 107 0.0241
GLY 108 0.0382
ALA 109 0.0211
GLU 110 0.0152
ALA 111 0.0149
LYS 112 0.0158
PRO 113 0.0193
TRP 114 0.0136
TYR 115 0.0122
GLU 116 0.0106
PRO 117 0.0024
ILE 118 0.0010
TYR 119 0.0033
LEU 120 0.0045
GLY 121 0.0041
GLY 122 0.0025
VAL 123 0.0015
PHE 124 0.0018
GLN 125 0.0040
LEU 126 0.0096
GLU 127 0.0107
LYS 128 0.0128
GLY 129 0.0171
ASP 130 0.0105
ARG 131 0.0105
LEU 132 0.0092
SER 133 0.0125
ALA 134 0.0141
GLU 135 0.0066
ILE 136 0.0056
ASN 137 0.0086
ARG 138 0.0125
PRO 139 0.0118
ASP 140 0.0135
TYR 141 0.0107
LEU 142 0.0103
LEU 143 0.0106
PHE 144 0.0075
ALA 145 0.0028
GLU 146 0.0042
SER 147 0.0060
GLY 148 0.0064
GLN 149 0.0057
VAL 150 0.0067
TYR 151 0.0075
PHE 152 0.0080
GLY 153 0.0087
ILE 154 0.0066
ILE 155 0.0060
ALA 156 0.0083
LEU 157 0.0087

If you find results from this site helpful for your research, please cite one of our papers:

K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.

Should you encounter any unexpected behaviour, please let us know.

*** LYMPHOKINE 25-AUG-89 1TNF ***

<R2> analysis for 2406080142331607873

--- normal mode 55 ---

Should you encounter any unexpected behaviour,
please let us know.

* LYMPHOKINE 25-AUG-89 1TNF *

<R²> analysis for 2406080142331607873