Should you encounter any unexpected behaviour,
please let us know.

* LYMPHOKINE 25-AUG-89 1TNF *

<R²> analysis for 2406080142331607873

--- normal mode 40 ---

This page gives a visualization of the normalized mean square displacement <R²> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

X Y Z residue <R²> <R²>_max = 0.1538
ARG 6 0.0280
THR 7 0.0267
PRO 8 0.0278
SER 9 0.0332
ASP 10 0.0305
LYS 11 0.0216
PRO 12 0.0130
VAL 13 0.0066
ALA 14 0.0063
HIS 15 0.0099
VAL 16 0.0163
VAL 17 0.0199
ALA 18 0.0208
ASN 19 0.0276
PRO 20 0.0319
GLN 21 0.0540
ALA 22 0.0150
GLU 23 0.0673
GLY 24 0.0298
GLN 25 0.0201
LEU 26 0.0131
GLN 27 0.0181
TRP 28 0.0239
LEU 29 0.0330
ASN 30 0.0344
ARG 31 0.0459
ARG 32 0.0424
ALA 33 0.0271
ASN 34 0.0162
ALA 35 0.0165
LEU 36 0.0095
LEU 37 0.0094
ALA 38 0.0068
ASN 39 0.0144
GLY 40 0.0159
VAL 41 0.0108
GLU 42 0.0095
LEU 43 0.0140
ARG 44 0.0208
ASP 45 0.0151
ASN 46 0.0162
GLN 47 0.0094
LEU 48 0.0028
VAL 49 0.0077
VAL 50 0.0091
PRO 51 0.0169
SER 52 0.0088
GLU 53 0.0120
GLY 54 0.0051
LEU 55 0.0051
TYR 56 0.0072
LEU 57 0.0072
ILE 58 0.0058
TYR 59 0.0049
SER 60 0.0049
GLN 61 0.0039
VAL 62 0.0052
LEU 63 0.0081
PHE 64 0.0086
LYS 65 0.0114
GLY 66 0.0089
GLN 67 0.0082
GLY 68 0.0056
CYS 69 0.0066
PRO 70 0.0080
SER 71 0.0088
THR 72 0.0084
HIS 73 0.0086
VAL 74 0.0090
LEU 75 0.0080
LEU 76 0.0054
THR 77 0.0050
HIS 78 0.0040
THR 79 0.0053
ILE 80 0.0062
SER 81 0.0038
ARG 82 0.0032
ILE 83 0.0115
ALA 84 0.0180
VAL 85 0.0274
SER 86 0.0395
TYR 87 0.0387
GLN 88 0.0397
THR 89 0.0367
LYS 90 0.0084
VAL 91 0.0099
ASN 92 0.0088
LEU 93 0.0061
LEU 94 0.0064
SER 95 0.0056
ALA 96 0.0041
ILE 97 0.0040
LYS 98 0.0038
SER 99 0.0069
PRO 100 0.0068
CYS 101 0.0068
GLN 102 0.0083
ARG 103 0.0079
GLU 104 0.0077
THR 105 0.0089
PRO 106 0.0059
GLU 107 0.0172
GLY 108 0.0108
ALA 109 0.0099
GLU 110 0.0089
ALA 111 0.0073
LYS 112 0.0072
PRO 113 0.0084
TRP 114 0.0087
TYR 115 0.0086
GLU 116 0.0080
PRO 117 0.0059
ILE 118 0.0028
TYR 119 0.0008
LEU 120 0.0054
GLY 121 0.0065
GLY 122 0.0077
VAL 123 0.0075
PHE 124 0.0060
GLN 125 0.0046
LEU 126 0.0043
GLU 127 0.0048
LYS 128 0.0127
GLY 129 0.0161
ASP 130 0.0105
ARG 131 0.0076
LEU 132 0.0010
SER 133 0.0043
ALA 134 0.0080
GLU 135 0.0063
ILE 136 0.0037
ASN 137 0.0052
ARG 138 0.0058
PRO 139 0.0041
ASP 140 0.0049
TYR 141 0.0075
LEU 142 0.0087
LEU 143 0.0136
PHE 144 0.0247
ALA 145 0.0281
GLU 146 0.0222
SER 147 0.0218
GLY 148 0.0144
GLN 149 0.0110
VAL 150 0.0104
TYR 151 0.0093
PHE 152 0.0082
GLY 153 0.0065
ILE 154 0.0052
ILE 155 0.0076
ALA 156 0.0087
LEU 157 0.0083
ARG 6 0.1538
THR 7 0.0797
PRO 8 0.0159
SER 9 0.0226
ASP 10 0.0237
LYS 11 0.0171
PRO 12 0.0103
VAL 13 0.0068
ALA 14 0.0101
HIS 15 0.0113
VAL 16 0.0122
VAL 17 0.0130
ALA 18 0.0131
ASN 19 0.0141
PRO 20 0.0109
GLN 21 0.0309
ALA 22 0.0313
GLU 23 0.0490
GLY 24 0.0200
GLN 25 0.0145
LEU 26 0.0131
GLN 27 0.0129
TRP 28 0.0161
LEU 29 0.0178
ASN 30 0.0093
ARG 31 0.0126
ARG 32 0.0133
ALA 33 0.0158
ASN 34 0.0107
ALA 35 0.0092
LEU 36 0.0075
LEU 37 0.0105
ALA 38 0.0112
ASN 39 0.0199
GLY 40 0.0252
VAL 41 0.0206
GLU 42 0.0210
LEU 43 0.0202
ARG 44 0.0343
ASP 45 0.0348
ASN 46 0.0267
GLN 47 0.0178
LEU 48 0.0138
VAL 49 0.0125
VAL 50 0.0101
PRO 51 0.0147
SER 52 0.0190
GLU 53 0.0209
GLY 54 0.0119
LEU 55 0.0092
TYR 56 0.0063
LEU 57 0.0068
ILE 58 0.0076
TYR 59 0.0092
SER 60 0.0092
GLN 61 0.0080
VAL 62 0.0068
LEU 63 0.0044
PHE 64 0.0048
LYS 65 0.0054
GLY 66 0.0066
GLN 67 0.0073
GLY 68 0.0062
CYS 69 0.0102
PRO 70 0.0118
SER 71 0.0170
THR 72 0.0120
HIS 73 0.0090
VAL 74 0.0053
LEU 75 0.0034
LEU 76 0.0033
THR 77 0.0034
HIS 78 0.0051
THR 79 0.0067
ILE 80 0.0090
SER 81 0.0119
ARG 82 0.0125
ILE 83 0.0133
ALA 84 0.0166
VAL 85 0.0234
SER 86 0.0252
TYR 87 0.0069
GLN 88 0.0170
THR 89 0.0248
LYS 90 0.0071
VAL 91 0.0066
ASN 92 0.0075
LEU 93 0.0058
LEU 94 0.0035
SER 95 0.0016
ALA 96 0.0011
ILE 97 0.0014
LYS 98 0.0017
SER 99 0.0058
PRO 100 0.0067
CYS 101 0.0087
GLN 102 0.0118
ARG 103 0.0169
GLU 104 0.0155
THR 105 0.0195
PRO 106 0.0124
GLU 107 0.0131
GLY 108 0.0103
ALA 109 0.0121
GLU 110 0.0096
ALA 111 0.0082
LYS 112 0.0094
PRO 113 0.0099
TRP 114 0.0057
TYR 115 0.0054
GLU 116 0.0049
PRO 117 0.0026
ILE 118 0.0033
TYR 119 0.0041
LEU 120 0.0040
GLY 121 0.0033
GLY 122 0.0029
VAL 123 0.0051
PHE 124 0.0070
GLN 125 0.0097
LEU 126 0.0148
GLU 127 0.0178
LYS 128 0.0161
GLY 129 0.0113
ASP 130 0.0114
ARG 131 0.0137
LEU 132 0.0138
SER 133 0.0149
ALA 134 0.0147
GLU 135 0.0088
ILE 136 0.0060
ASN 137 0.0055
ARG 138 0.0100
PRO 139 0.0104
ASP 140 0.0118
TYR 141 0.0068
LEU 142 0.0067
LEU 143 0.0059
PHE 144 0.0067
ALA 145 0.0063
GLU 146 0.0059
SER 147 0.0066
GLY 148 0.0078
GLN 149 0.0062
VAL 150 0.0106
TYR 151 0.0109
PHE 152 0.0115
GLY 153 0.0101
ILE 154 0.0076
ILE 155 0.0054
ALA 156 0.0040
LEU 157 0.0063
ARG 6 0.0081
THR 7 0.0071
PRO 8 0.0089
SER 9 0.0079
ASP 10 0.0040
LYS 11 0.0038
PRO 12 0.0023
VAL 13 0.0035
ALA 14 0.0053
HIS 15 0.0043
VAL 16 0.0066
VAL 17 0.0077
ALA 18 0.0090
ASN 19 0.0104
PRO 20 0.0110
GLN 21 0.0149
ALA 22 0.0128
GLU 23 0.0145
GLY 24 0.0077
GLN 25 0.0076
LEU 26 0.0088
GLN 27 0.0138
TRP 28 0.0118
LEU 29 0.0107
ASN 30 0.0105
ARG 31 0.0086
ARG 32 0.0061
ALA 33 0.0040
ASN 34 0.0038
ALA 35 0.0047
LEU 36 0.0044
LEU 37 0.0053
ALA 38 0.0034
ASN 39 0.0049
GLY 40 0.0074
VAL 41 0.0070
GLU 42 0.0146
LEU 43 0.0182
ARG 44 0.0255
ASP 45 0.0271
ASN 46 0.0219
GLN 47 0.0166
LEU 48 0.0125
VAL 49 0.0113
VAL 50 0.0076
PRO 51 0.0057
SER 52 0.0085
GLU 53 0.0122
GLY 54 0.0152
LEU 55 0.0155
TYR 56 0.0119
LEU 57 0.0072
ILE 58 0.0066
TYR 59 0.0060
SER 60 0.0054
GLN 61 0.0044
VAL 62 0.0037
LEU 63 0.0012
PHE 64 0.0019
LYS 65 0.0033
GLY 66 0.0091
GLN 67 0.0098
GLY 68 0.0132
CYS 69 0.0192
PRO 70 0.0214
SER 71 0.0240
THR 72 0.0182
HIS 73 0.0123
VAL 74 0.0097
LEU 75 0.0039
LEU 76 0.0023
THR 77 0.0009
HIS 78 0.0052
THR 79 0.0072
ILE 80 0.0092
SER 81 0.0142
ARG 82 0.0116
ILE 83 0.0115
ALA 84 0.0110
VAL 85 0.0139
SER 86 0.0119
TYR 87 0.0158
GLN 88 0.0168
THR 89 0.0170
LYS 90 0.0104
VAL 91 0.0096
ASN 92 0.0101
LEU 93 0.0082
LEU 94 0.0079
SER 95 0.0078
ALA 96 0.0067
ILE 97 0.0068
LYS 98 0.0070
SER 99 0.0054
PRO 100 0.0095
CYS 101 0.0140
GLN 102 0.0081
ARG 103 0.0147
GLU 104 0.0181
THR 105 0.0214
PRO 106 0.0120
GLU 107 0.0097
GLY 108 0.0133
ALA 109 0.0126
GLU 110 0.0039
ALA 111 0.0075
LYS 112 0.0062
PRO 113 0.0082
TRP 114 0.0065
TYR 115 0.0034
GLU 116 0.0025
PRO 117 0.0017
ILE 118 0.0021
TYR 119 0.0023
LEU 120 0.0051
GLY 121 0.0046
GLY 122 0.0046
VAL 123 0.0088
PHE 124 0.0121
GLN 125 0.0151
LEU 126 0.0125
GLU 127 0.0096
LYS 128 0.0067
GLY 129 0.0088
ASP 130 0.0112
ARG 131 0.0144
LEU 132 0.0130
SER 133 0.0138
ALA 134 0.0129
GLU 135 0.0069
ILE 136 0.0045
ASN 137 0.0042
ARG 138 0.0054
PRO 139 0.0046
ASP 140 0.0055
TYR 141 0.0040
LEU 142 0.0023
LEU 143 0.0025
PHE 144 0.0069
ALA 145 0.0061
GLU 146 0.0057
SER 147 0.0025
GLY 148 0.0020
GLN 149 0.0027
VAL 150 0.0055
TYR 151 0.0056
PHE 152 0.0065
GLY 153 0.0075
ILE 154 0.0066
ILE 155 0.0056
ALA 156 0.0111
LEU 157 0.0122

If you find results from this site helpful for your research, please cite one of our papers:

K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.

Should you encounter any unexpected behaviour, please let us know.

*** LYMPHOKINE 25-AUG-89 1TNF ***

<R2> analysis for 2406080142331607873

--- normal mode 40 ---

Should you encounter any unexpected behaviour,
please let us know.

* LYMPHOKINE 25-AUG-89 1TNF *

<R²> analysis for 2406080142331607873