CNRS Nantes University UFIP UFIP
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.


***  TRANSFERASE 31-MAR-06 2CJD  ***

<R2> analysis for 220405004109145553

---  normal mode 15  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0438
THR 150.0196
THR 160.0170
PRO 170.0125
ASP 180.0122
ARG 190.0131
VAL 200.0113
HIS 210.0127
GLU 220.0120
VAL 230.0122
LEU 240.0197
GLY 250.0191
ARG 260.0216
SER 270.0304
MET 280.0295
LEU 290.0251
VAL 300.0220
ASP 310.0285
GLY 320.0233
LEU 330.0117
ASP 340.0128
ILE 350.0122
VAL 360.0122
LEU 370.0103
ASP 380.0104
LEU 390.0085
THR 400.0090
ARG 410.0100
SER 420.0079
GLY 430.0073
GLY 440.0067
SER 450.0042
TYR 460.0053
LEU 470.0064
VAL 480.0100
ASP 490.0115
ALA 500.0126
ILE 510.0135
THR 520.0150
GLY 530.0133
ARG 540.0107
ARG 550.0085
TYR 560.0063
LEU 570.0026
ASP 580.0032
MET 590.0033
PHE 600.0042
THR 610.0051
PHE 620.0055
VAL 630.0072
ALA 640.0078
SER 650.0079
SER 660.0055
ALA 670.0056
LEU 680.0048
GLY 690.0062
MET 700.0044
ASN 710.0069
PRO 720.0165
PRO 730.0298
ALA 740.0286
LEU 750.0261
VAL 760.0330
ASP 770.0415
ASP 780.0381
ARG 790.0438
GLU 800.0399
PHE 810.0322
HIS 820.0383
ALA 830.0418
GLU 840.0354
LEU 850.0321
MET 860.0391
GLN 870.0408
ALA 880.0335
ALA 890.0315
LEU 900.0364
ASN 910.0354
LYS 920.0300
PRO 930.0320
SER 940.0335
ASN 950.0322
SER 960.0360
ASP 970.0420
VAL 980.0410
TYR 990.0423
SER 1000.0401
VAL 1010.0394
ALA 1020.0283
MET 1030.0253
ALA 1040.0269
ARG 1050.0176
PHE 1060.0123
VAL 1070.0130
GLU 1080.0090
THR 1090.0044
PHE 1100.0051
ALA 1110.0077
ARG 1120.0040
VAL 1130.0050
LEU 1140.0100
GLY 1150.0103
ASP 1160.0110
PRO 1170.0109
ALA 1180.0100
LEU 1190.0105
PRO 1200.0106
HIS 1210.0100
LEU 1220.0099
PHE 1230.0084
PHE 1240.0104
VAL 1250.0123
GLU 1260.0124
GLY 1270.0146
GLY 1280.0161
ALA 1290.0169
LEU 1300.0146
ALA 1310.0124
VAL 1320.0127
GLU 1330.0124
ASN 1340.0108
ALA 1350.0093
LEU 1360.0091
LYS 1370.0095
ALA 1380.0121
ALA 1390.0079
PHE 1400.0117
ASP 1410.0168
TRP 1420.0126
LYS 1430.0132
SER 1440.0219
ARG 1450.0195
HIS 1460.0161
ASN 1470.0245
GLN 1480.0297
ALA 1490.0268
HIS 1500.0301
GLY 1510.0384
ILE 1520.0357
ASP 1530.0395
PRO 1540.0342
ALA 1550.0365
LEU 1560.0262
GLY 1570.0185
THR 1580.0175
GLN 1590.0123
VAL 1600.0081
LEU 1610.0047
HIS 1620.0051
LEU 1630.0065
ARG 1640.0076
GLY 1650.0101
ALA 1660.0106
PHE 1670.0132
HIS 1680.0148
GLY 1690.0185
ARG 1700.0212
SER 1710.0194
GLY 1720.0184
TYR 1730.0143
THR 1740.0144
LEU 1750.0163
SER 1760.0123
LEU 1770.0093
THR 1780.0118
ASN 1790.0103
THR 1800.0093
LYS 1810.0116
PRO 1820.0119
THR 1830.0224
ILE 1840.0216
THR 1850.0193
ALA 1860.0281
ARG 1870.0358
PHE 1880.0280
PRO 1890.0230
LYS 1900.0187
PHE 1910.0165
ASP 1920.0126
TRP 1930.0091
PRO 1940.0062
ARG 1950.0041
ILE 1960.0056
ASP 1970.0083
ALA 1980.0081
PRO 1990.0101
TYR 2000.0119
MET 2010.0129
ARG 2020.0122
PRO 2030.0120
GLY 2040.0196
LEU 2050.0181
ASP 2060.0241
GLU 2070.0274
PRO 2080.0253
ALA 2090.0189
MET 2100.0175
ALA 2110.0178
ALA 2120.0174
LEU 2130.0144
GLU 2140.0130
ALA 2150.0146
GLU 2160.0154
ALA 2170.0116
LEU 2180.0125
ARG 2190.0160
GLN 2200.0125
ALA 2210.0113
ARG 2220.0159
ALA 2230.0170
ALA 2240.0139
PHE 2250.0156
GLU 2260.0213
THR 2270.0219
ARG 2280.0201
PRO 2290.0237
HIS 2300.0224
ASP 2310.0185
ILE 2320.0122
ALA 2330.0105
CYS 2340.0054
PHE 2350.0047
VAL 2360.0073
ALA 2370.0105
GLU 2380.0119
PRO 2390.0122
ILE 2400.0128
GLN 2410.0121
GLY 2420.0125
GLU 2430.0120
GLY 2440.0111
GLY 2450.0104
ASP 2460.0113
ARG 2470.0112
HIS 2480.0118
PHE 2490.0125
ARG 2500.0138
PRO 2510.0121
GLU 2520.0136
PHE 2530.0112
PHE 2540.0090
ALA 2550.0103
ALA 2560.0106
MET 2570.0083
ARG 2580.0082
GLU 2590.0107
LEU 2600.0110
CYS 2610.0077
ASP 2620.0092
GLU 2630.0140
PHE 2640.0141
ASP 2650.0117
ALA 2660.0082
LEU 2670.0053
LEU 2680.0061
ILE 2690.0083
PHE 2700.0111
ASP 2710.0123
GLU 2720.0134
VAL 2730.0133
GLN 2740.0130
THR 2750.0132
GLY 2760.0118
CYS 2770.0107
GLY 2780.0105
LEU 2790.0107
THR 2800.0116
GLY 2810.0120
THR 2820.0122
ALA 2830.0122
TRP 2840.0127
ALA 2850.0121
TYR 2860.0119
GLN 2870.0121
GLN 2880.0110
LEU 2890.0106
ASP 2900.0102
VAL 2910.0097
ALA 2920.0094
PRO 2930.0092
ASP 2940.0076
ILE 2950.0093
VAL 2960.0116
ALA 2970.0128
PHE 2980.0121
GLY 2990.0122
LYS 3000.0095
LYS 3010.0078
THR 3020.0072
GLN 3030.0050
VAL 3040.0076
CYS 3050.0110
GLY 3060.0117
VAL 3070.0112
MET 3080.0107
ALA 3090.0100
GLY 3100.0087
ARG 3110.0070
ARG 3120.0045
VAL 3130.0075
ASP 3140.0083
GLU 3150.0072
VAL 3160.0117
ALA 3170.0141
ASP 3180.0175
ASN 3190.0138
VAL 3200.0140
PHE 3210.0137
ALA 3220.0172
VAL 3230.0198
PRO 3240.0194
SER 3250.0147
ARG 3260.0103
LEU 3270.0134
ASN 3280.0221
SER 3290.0311
THR 3300.0333
TRP 3310.0263
GLY 3320.0238
GLY 3330.0189
ASN 3340.0154
LEU 3350.0199
THR 3360.0183
ASP 3370.0108
MET 3380.0129
VAL 3390.0182
ARG 3400.0137
ALA 3410.0070
ARG 3420.0099
ARG 3430.0130
ILE 3440.0085
LEU 3450.0030
GLU 3460.0070
VAL 3470.0099
ILE 3480.0047
GLU 3490.0060
ALA 3500.0092
GLU 3510.0084
GLY 3520.0091
LEU 3530.0066
PHE 3540.0099
GLU 3550.0112
ARG 3560.0096
ALA 3570.0097
VAL 3580.0120
GLN 3590.0127
HIS 3600.0117
GLY 3610.0116
LYS 3620.0143
TYR 3630.0154
LEU 3640.0119
ARG 3650.0136
ALA 3660.0187
ARG 3670.0166
LEU 3680.0139
ASP 3690.0194
GLU 3700.0227
LEU 3710.0196
ALA 3720.0200
ALA 3730.0263
ASP 3740.0278
PHE 3750.0248
PRO 3760.0245
ALA 3770.0232
VAL 3780.0186
VAL 3790.0148
LEU 3800.0123
ASP 3810.0091
PRO 3820.0110
ARG 3830.0116
GLY 3840.0106
ARG 3850.0112
GLY 3860.0119
LEU 3870.0094
MET 3880.0096
CYS 3890.0083
ALA 3900.0067
PHE 3910.0065
SER 3920.0051
LEU 3930.0114
PRO 3940.0154
THR 3950.0151
THR 3960.0142
ALA 3970.0199
ASP 3980.0181
ARG 3990.0112
ASP 4000.0149
GLU 4010.0190
LEU 4020.0142
ILE 4030.0103
ARG 4040.0152
GLN 4050.0143
LEU 4060.0081
TRP 4070.0078
GLN 4080.0119
ARG 4090.0082
ALA 4100.0034
VAL 4110.0027
ILE 4120.0029
VAL 4130.0024
LEU 4140.0039
PRO 4150.0045
ALA 4160.0070
GLY 4170.0077
ALA 4180.0058
ASP 4190.0028
THR 4200.0011
VAL 4210.0012
ARG 4220.0047
PHE 4230.0046
ARG 4240.0061
PRO 4250.0057
PRO 4260.0043
LEU 4270.0059
THR 4280.0050
VAL 4290.0067
SER 4300.0090
THR 4310.0108
ALA 4320.0110
GLU 4330.0076
ILE 4340.0094
ASP 4350.0124
ALA 4360.0107
ALA 4370.0089
ILE 4380.0129
ALA 4390.0153
ALA 4400.0129
VAL 4410.0143
ARG 4420.0194
SER 4430.0207
ALA 4440.0191
LEU 4450.0215
PRO 4460.0279
VAL 4470.0271
VAL 4480.0248
THR 4490.0286

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.