CNRS Nantes University UFIP UFIP
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.


***  TRANSPORT PROTEIN 20-JUN-16 5GHK  ***

<R2> analysis for 20112707095998351

---  normal mode 11  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0765
TYR 30.0082
LYS 40.0088
SER 50.0071
GLU 60.0054
ILE 70.0044
ALA 80.0053
HIS 90.0054
ARG 100.0040
TYR 110.0036
ASN 120.0048
ASP 130.0049
LEU 140.0037
GLY 150.0033
GLU 160.0027
GLU 170.0028
HIS 180.0030
PHE 190.0025
ARG 200.0022
GLY 210.0026
LEU 220.0026
VAL 230.0021
LEU 240.0023
VAL 250.0032
ALA 260.0028
PHE 270.0029
SER 280.0038
GLN 290.0043
TYR 300.0038
LEU 310.0046
GLN 320.0053
GLN 330.0058
CYS 340.0050
PRO 350.0045
PHE 360.0031
GLU 370.0028
ASP 380.0031
HIS 390.0026
VAL 400.0019
LYS 410.0025
LEU 420.0028
ALA 430.0021
LYS 440.0026
GLU 450.0033
VAL 460.0031
THR 470.0029
GLU 480.0039
PHE 490.0049
ALA 500.0042
LYS 510.0043
ALA 520.0058
CYS 530.0064
ALA 540.0059
ALA 550.0071
GLU 560.0084
GLU 570.0083
SER 580.0097
GLY 590.0091
ALA 600.0091
ASN 610.0077
CYS 620.0070
ASP 630.0078
LYS 640.0065
SER 650.0050
LEU 660.0035
HIS 670.0031
THR 680.0045
LEU 690.0046
PHE 700.0034
GLY 710.0041
ASP 720.0053
LYS 730.0048
LEU 740.0046
CYS 750.0059
THR 760.0062
VAL 770.0060
ALA 780.0074
ALA 880.0091
ASP 890.0093
CYS 900.0072
CYS 910.0073
GLU 920.0086
LYS 930.0073
GLN 940.0068
GLU 950.0056
PRO 960.0038
ASP 970.0042
ARG 980.0046
ASN 990.0033
GLU 1000.0036
CYS 1010.0052
PHE 1020.0047
LEU 1030.0042
ALA 1040.0057
HIS 1050.0064
LYS 1060.0059
ASP 1070.0074
ASP 1080.0083
ASN 1090.0088
PRO 1100.0082
GLY 1110.0088
PHE 1120.0089
PRO 1130.0101
ASP 1210.0504
ALA 1220.0456
LEU 1230.0322
CYS 1240.0293
ALA 1250.0317
ALA 1260.0205
PHE 1270.0150
GLN 1280.0198
ASP 1290.0156
ASN 1300.0050
GLU 1310.0062
GLN 1320.0057
LEU 1330.0039
PHE 1340.0029
LEU 1350.0025
GLY 1360.0031
LYS 1370.0032
TYR 1380.0035
LEU 1390.0041
TYR 1400.0041
GLU 1410.0050
ILE 1420.0057
ALA 1430.0048
ARG 1440.0052
ARG 1450.0071
HIS 1460.0067
PRO 1470.0057
TYR 1480.0058
PHE 1490.0062
TYR 1500.0059
ALA 1510.0052
PRO 1520.0055
GLU 1530.0067
LEU 1540.0065
LEU 1550.0059
TYR 1560.0066
TYR 1570.0067
ALA 1580.0061
GLN 1590.0071
GLN 1600.0077
TYR 1610.0037
LYS 1620.0102
GLY 1630.0209
VAL 1640.0191
PHE 1650.0227
ALA 1660.0329
GLU 1670.0401
CYS 1680.0409
CYS 1690.0415
GLN 1700.0530
ALA 1710.0622
ALA 1720.0765
ASP 1730.0682
LYS 1740.0543
ALA 1750.0490
ALA 1760.0505
CYS 1770.0426
LEU 1780.0316
GLY 1790.0306
PRO 1800.0227
LYS 1810.0178
ILE 1820.0111
GLU 1830.0093
ALA 1840.0038
LEU 1850.0033
ARG 1860.0042
GLU 1870.0068
LYS 1880.0074
VAL 1890.0075
LEU 1900.0079
LEU 1910.0092
SER 1920.0093
SER 1930.0085
ALA 1940.0088
LYS 1950.0086
GLU 1960.0075
ARG 1970.0075
PHE 1980.0074
LYS 1990.0062
CYS 2000.0053
ALA 2010.0059
SER 2020.0047
LEU 2030.0034
GLN 2040.0036
LYS 2050.0050
PHE 2060.0044
GLY 2070.0022
ASP 2080.0019
ARG 2090.0019
ALA 2100.0021
PHE 2110.0025
LYS 2120.0028
ALA 2130.0021
TRP 2140.0031
SER 2150.0051
VAL 2160.0057
ALA 2170.0052
ARG 2180.0070
LEU 2190.0086
SER 2200.0085
GLN 2210.0097
ARG 2220.0120
PHE 2230.0134
PRO 2240.0143
LYS 2250.0173
ALA 2260.0159
ASP 2270.0156
PHE 2280.0129
ALA 2290.0141
GLU 2300.0145
ILE 2310.0114
SER 2320.0097
LYS 2330.0109
VAL 2340.0098
VAL 2350.0065
THR 2360.0064
ASP 2370.0065
LEU 2380.0050
THR 2390.0033
LYS 2400.0030
VAL 2410.0037
HIS 2420.0034
LYS 2430.0016
GLU 2440.0019
CYS 2450.0029
CYS 2460.0034
HIS 2470.0022
GLY 2480.0021
ASP 2490.0017
LEU 2500.0022
LEU 2510.0022
GLU 2520.0030
CYS 2530.0029
ALA 2540.0036
ASP 2550.0043
ASP 2560.0046
ARG 2570.0051
ALA 2580.0067
ASP 2590.0084
LEU 2600.0087
ALA 2610.0098
LYS 2620.0131
TYR 2630.0137
MET 2640.0134
CYS 2650.0164
GLU 2660.0184
ASN 2670.0186
GLN 2680.0189
ASP 2690.0218
SER 2700.0197
ILE 2710.0170
SER 2720.0183
THR 2730.0215
LYS 2740.0203
LEU 2750.0183
LYS 2760.0215
GLU 2770.0207
CYS 2780.0167
CYS 2790.0166
ASP 2800.0174
LYS 2810.0133
PRO 2820.0095
VAL 2830.0064
LEU 2840.0058
GLU 2850.0082
LYS 2860.0107
SER 2870.0075
GLN 2880.0089
CYS 2890.0129
LEU 2900.0119
ALA 2910.0097
GLU 2920.0125
VAL 2930.0144
GLU 2940.0158
ARG 2950.0163
ASP 2960.0187
GLU 2970.0202
LEU 2980.0177
PRO 2990.0198
GLY 3000.0193
ASP 3010.0200
LEU 3020.0146
PRO 3030.0121
SER 3040.0070
LEU 3050.0057
ALA 3060.0045
ALA 3070.0089
ASP 3080.0115
PHE 3090.0101
VAL 3100.0104
GLU 3110.0110
ASP 3120.0160
LYS 3130.0219
GLU 3140.0241
VAL 3150.0197
CYS 3160.0241
LYS 3170.0285
ASN 3180.0250
TYR 3190.0219
GLN 3200.0273
GLU 3210.0294
ALA 3220.0241
LYS 3230.0197
ASP 3240.0157
VAL 3250.0164
PHE 3260.0149
LEU 3270.0109
GLY 3280.0095
THR 3290.0100
PHE 3300.0065
LEU 3310.0041
TYR 3320.0071
GLU 3330.0072
TYR 3340.0042
ALA 3350.0056
ARG 3360.0093
ARG 3370.0084
HIS 3380.0087
PRO 3390.0111
GLU 3400.0110
TYR 3410.0091
SER 3420.0087
VAL 3430.0066
SER 3440.0069
LEU 3450.0076
LEU 3460.0054
LEU 3470.0049
ARG 3480.0068
LEU 3490.0073
ALA 3500.0066
LYS 3510.0095
GLU 3520.0131
TYR 3530.0116
GLU 3540.0142
ALA 3550.0192
THR 3560.0198
LEU 3570.0197
GLU 3580.0247
LYS 3590.0276
CYS 3600.0258
CYS 3610.0267
ALA 3620.0328
PRO 3660.0276
PRO 3670.0218
THR 3680.0233
CYS 3690.0235
TYR 3700.0186
ALA 3710.0158
LYS 3720.0176
VAL 3730.0150
LEU 3740.0107
ASP 3750.0130
GLU 3760.0148
PHE 3770.0115
LYS 3780.0125
PRO 3790.0139
LEU 3800.0115
VAL 3810.0104
ASP 3820.0120
GLU 3830.0113
PRO 3840.0098
GLN 3850.0105
ASN 3860.0113
LEU 3870.0091
VAL 3880.0090
LYS 3890.0095
THR 3900.0082
ASN 3910.0077
CYS 3920.0075
GLU 3930.0078
LEU 3940.0075
PHE 3950.0071
GLU 3960.0065
LYS 3970.0069
LEU 3980.0068
GLY 3990.0078
GLU 4000.0074
TYR 4010.0082
GLY 4020.0070
PHE 4030.0064
GLN 4040.0067
ASN 4050.0056
ALA 4060.0043
LEU 4070.0048
LEU 4080.0049
VAL 4090.0029
ARG 4100.0033
TYR 4110.0057
THR 4120.0070
LYS 4130.0070
LYS 4140.0068
ALA 4150.0102
PRO 4160.0115
GLN 4170.0138
VAL 4180.0135
SER 4190.0141
THR 4200.0122
PRO 4210.0133
THR 4220.0128
LEU 4230.0100
VAL 4240.0096
GLU 4250.0113
VAL 4260.0101
SER 4270.0080
ARG 4280.0091
LYS 4290.0090
LEU 4300.0079
GLY 4310.0075
LYS 4320.0076
VAL 4330.0079
GLY 4340.0077
THR 4350.0070
LYS 4360.0075
CYS 4370.0081
CYS 4380.0081
LYS 4390.0079
LYS 4400.0083
PRO 4410.0091
GLU 4420.0095
SER 4430.0098
GLU 4440.0092
ARG 4450.0091
MET 4460.0093
SER 4470.0093
CYS 4480.0091
ALA 4490.0094
GLU 4500.0089
ASP 4510.0083
PHE 4520.0088
LEU 4530.0087
SER 4540.0083
VAL 4550.0086
VAL 4560.0090
LEU 4570.0087
ASN 4580.0089
ARG 4590.0098
LEU 4600.0093
CYS 4610.0096
VAL 4620.0105
LEU 4630.0103
HIS 4640.0098
GLU 4650.0103
LYS 4660.0105
THR 4670.0099
PRO 4680.0112
VAL 4690.0109
SER 4700.0103
GLU 4710.0112
ARG 4720.0090
VAL 4730.0090
THR 4740.0099
LYS 4750.0091
CYS 4760.0078
CYS 4770.0084
SER 4780.0085
GLU 4790.0079
SER 4800.0071
LEU 4810.0069
VAL 4820.0071
ASN 4830.0076
ARG 4840.0080
ARG 4850.0081
PRO 4860.0073
CYS 4870.0072
PHE 4880.0067
SER 4890.0047
GLY 4900.0039
LEU 4910.0052
GLU 4920.0054
VAL 4930.0077
ASP 4940.0109
GLU 4950.0165
THR 4960.0193
TYR 4970.0187
VAL 4980.0260
PRO 4990.0235
LYS 5000.0269
GLU 5010.0315
PHE 5020.0259
ASN 5030.0267
ALA 5040.0246
GLU 5050.0238
THR 5060.0180
PHE 5070.0128
THR 5080.0152
PHE 5090.0107
HIS 5100.0158
ALA 5110.0185
ASP 5120.0260
LEU 5130.0200
CYS 5140.0253
THR 5150.0334
LEU 5160.0312
PRO 5170.0343
GLU 5180.0284
ALA 5190.0268
GLU 5200.0249
LYS 5210.0197
GLN 5220.0138
VAL 5230.0136
LYS 5240.0123
LYS 5250.0074
GLN 5260.0061
THR 5270.0095
ALA 5280.0064
LEU 5290.0034
VAL 5300.0072
GLU 5310.0114
LEU 5320.0100
LEU 5330.0105
LYS 5340.0153
HIS 5350.0188
LYS 5360.0185
PRO 5370.0139
LYS 5380.0163
ALA 5390.0156
THR 5400.0186
ASP 5410.0179
GLU 5420.0232
GLN 5430.0214
LEU 5440.0148
LYS 5450.0181
THR 5460.0223
VAL 5470.0163
MET 5480.0137
GLY 5490.0219
ASP 5500.0201
PHE 5510.0118
GLY 5520.0178
ALA 5530.0231
PHE 5540.0156
VAL 5550.0140
GLU 5560.0241
LYS 5570.0246
CYS 5580.0159
CYS 5590.0203
ALA 5600.0288
ALA 5610.0245
GLU 5620.0274
ASN 5630.0202
LYS 5640.0134
GLU 5650.0083
GLY 5660.0027
CYS 5670.0072
PHE 5680.0028
SER 5690.0110
GLU 5700.0158
GLU 5710.0129
GLY 5720.0216
PRO 5730.0278
LYS 5740.0250
LEU 5750.0191
VAL 5760.0207
ALA 5770.0287
ALA 5780.0279
ALA 5790.0221
GLN 5800.0264
ALA 5810.0319
ALA 5820.0272
LEU 5830.0247
VAL 5840.0323

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.