*** ***
output from eigenvector calculation:
STDOUT:
Build Tirion matrix:
Pdbmat> Computes the Hessian matrix, using an Elastic Network Model.
Pdbmat> Version 3.50, Fevrier 2004.
Pdbmat> Options to be read in pdbmat.dat file.
Pdbmat> Coordinate filename = 240503173552133306.atom
Pdbmat> Distance cutoff = 8.00
Force constant = 10.00
Origin of mass values = CONS
Pdbmat> Levelshift = 1.0E-09
PRINTing level = 2
Pdbmat> Coordinate file 240503173552133306.atom to be opened.
Openam> File opened: 240503173552133306.atom
Pdbmat> Coordinate file in PDB format.
Rdatompdb> Reading pdb file.
Rdatompdb> End of file reached.
Rdatompdb> Number of I/O errors: 0
Rdatompdb> Number of residues found = 186
First residue number = 96
Last residue number = 1291
Number of atoms found = 186
Mean number per residue = 1.0
Pdbmat> Coordinate statistics:
= 103.306774 +/- 9.474875 From: 82.510000 To: 123.336000
= -69.137833 +/- 8.265771 From: -89.126000 To: -49.877000
= -263.938457 +/- 9.494185 From: -283.950000 To: -243.076000
Pdbmat> Masses are all set to one.
%Pdbmat-W> residue:'ZN ' is not a well known amino-acid.
%Pdbmat-W> 1 residue(s) not known.
Openam> File opened: pdbmat.xyzm
Pdbmat> Coordinates and masses considered are saved.
Openam> File opened: pdbmat.sdijf
Pdbmat> Matrix statistics:
Pdbmat> The matrix is 5.9034 % Filled.
Pdbmat> 9207 non-zero elements.
Pdbmat> 899 atom-atom interactions.
Pdbmat> Number per atom= 9.67 +/- 3.17
Maximum number = 18
Minimum number = 3
Pdbmat> Matrix trace = 17980.0
Pdbmat> Larger element = 68.8812
Pdbmat> 0 elements larger than +/- 1.0E+10
Pdbmat> Normal end.
using diagstd (there are 186 atoms in your structure)
Diagstd> Version 1.05, August 2004.
Diagstd> Matrix to be read from file: pdbmat.sdijf
Diagstd> Lecture de la matrice -Format CERFACS-
Diagstd> Matrix dimension (Nord) = 558
Diagstd> Number of non-zero elements 9207
Diagstd> Nb of elements found twice: 0
Diagstd> Nb of elements > 1E+10 : 0
Diagstd> Matrix trace: 17980.0000006
%Diagstd-Wn: Nb on non-zero elements there: 558
Openam> file on opening on unit 11:
pdbmat.eigenfacs
Diagstd> Diagonalization.
Diagstd> 558 eigenvectors are about to be computed.
Diagstd> Sum of eigenvalues = 17980.0000006
Diagstd> Eigenvalues:
0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
0.0000000 0.0024592 0.0565977 0.0717578 0.1035339
0.1155611 0.1290452 0.1587752 0.1748258 0.2014374
0.2241646 0.2439660 0.2826586 0.2926573 0.3754295
0.4093242 0.4308621 0.4990309 0.5046708 0.5909937
0.6146104 0.6663133 0.7072316 0.7995118 0.8605125
0.9076054 0.9597221 0.9613509 1.0012797 1.0357299
1.0884582 1.1805369 1.2395072 1.3433623 1.3777237
1.4167042 1.4563693 1.5505614 1.6249558 1.7273608
1.8272597 1.8881236 1.9221193 1.9689513 2.0728786
2.1481222 2.2492188 2.3657741 2.4013479 2.5434989
2.5799999 2.6233549 2.6696752 2.7623523 2.8328682
2.8497004 2.9786845 3.1779673 3.2796330 3.3517618
3.4350159 3.5949334 3.6306061 3.7432704 3.8459184
3.9067576 4.0202210 4.1113247 4.1798455 4.2136513
4.2603878 4.3037720 4.4260444 4.5134708 4.6224496
4.7103326 4.7823114 4.8513977 4.9332075 5.0844367
5.1041654 5.3628812 5.4028588 5.4678228 5.5387758
5.5973741 5.6664396 5.7307187 5.8143811 5.9231229
6.0839304 6.1322967 6.2858364 6.3757234 6.4860243
6.5169430 6.6528662 6.7698891 6.9125378 6.9340652
6.9711618 7.0723483 7.1771529 7.3809145 7.4124947
7.5177397 7.5518569 7.7565094 7.7677406 7.8578511
7.9392055 8.1587120 8.2255615 8.4275276 8.4948202
8.5455385 8.6261100 8.6951280 8.8709309 8.9576266
9.0722817 9.1856522 9.2663269 9.4206414 9.4309245
9.5549626 9.7151312 9.8341541 9.8638418 9.9943864
10.2310028 10.2589662 10.4166097 10.5689818 10.7524021
10.7847883 10.9427363 11.0483711 11.0640144 11.1834073
11.2970196 11.3726047 11.4935249 11.6683000 11.7622565
11.9232918 11.9781358 12.0389630 12.1086236 12.2703168
12.4031526 12.6310851 12.7757569 12.8204722 12.9998917
13.0790989 13.2037488 13.3281857 13.3922128 13.5123205
13.6759672 13.6871759 13.7399169 13.8619332 13.9805585
14.1169869 14.2178975 14.3895847 14.6386223 14.7332405
14.8658839 15.0429519 15.1241873 15.2230641 15.3245919
15.3914390 15.4871250 15.6207703 15.7835437 15.8945010
15.9045523 16.1069566 16.2152273 16.5011861 16.6922264
16.7027236 16.7835287 16.9514206 17.0366575 17.1238619
17.2236366 17.2690347 17.3700656 17.5193607 17.5415288
17.6714996 17.8034109 17.9926053 18.0469941 18.2975423
18.4130292 18.4863413 18.7404529 18.8282365 18.8982597
19.1425280 19.2397445 19.3998990 19.4369211 19.5941489
19.6851808 19.7430447 19.8581510 19.9766872 20.1698617
20.3940195 20.4988829 20.5526684 20.5921304 20.7424732
20.8051202 20.9774632 21.1902480 21.2949979 21.3949338
21.5633885 21.7787714 21.8874303 21.9119517 21.9664395
22.2178033 22.2669538 22.3780986 22.5653225 22.7324671
22.7742395 22.8984534 23.0022468 23.2039238 23.2610689
23.3424482 23.4703320 23.6572898 23.7366709 23.8093540
23.8885588 24.0153109 24.1174770 24.2085799 24.3672095
24.3982626 24.5173542 24.6238981 24.6723884 24.8392690
24.9391437 24.9820888 25.1077535 25.2821301 25.3247454
25.4331131 25.4905792 25.5736993 25.7817024 25.8340586
26.0016051 26.0592133 26.1341472 26.1846593 26.2608359
26.3266759 26.5765385 26.6628446 26.7332715 26.8843853
26.9749897 27.1268661 27.2273028 27.3999661 27.5952581
27.6219663 27.8244384 27.9895704 28.1529528 28.1983546
28.4015450 28.5183725 28.6814748 28.8179326 28.9670503
29.0907563 29.1207375 29.2016224 29.3484345 29.4161908
29.4530541 29.6139425 29.7892585 29.9069612 30.0197569
30.1355165 30.2206955 30.5677070 30.6187264 30.8299902
30.9863071 31.1667389 31.3146879 31.5171202 31.8087889
31.8761570 32.1972001 32.2935070 32.4009506 32.5288424
32.7839516 32.8629360 33.2311279 33.3985076 33.5300643
33.5851523 33.8865142 34.0190138 34.0461653 34.3355244
34.6325700 34.6616559 34.7763358 34.8626852 35.0662526
35.3680865 35.4315427 35.5083860 35.6283680 35.7117305
35.9375508 36.0005102 36.1430723 36.2755767 36.3780858
36.5375793 36.7083982 36.8674858 37.0873184 37.1023772
37.2387812 37.4705217 37.7543534 37.8986341 37.9945968
38.2338753 38.4367551 38.7682117 38.8665611 38.9290042
39.0927296 39.2522698 39.3981866 39.4676981 39.6056988
39.7523110 39.9450922 40.1152881 40.1791146 40.2966352
40.6148093 40.6456573 40.8182201 41.0525234 41.1550022
41.4623021 41.6284528 41.8763197 42.0442070 42.1008812
42.2219338 42.4266377 42.5525659 42.6605627 42.9956241
43.1298805 43.1810469 43.4150197 43.6674222 43.7960067
44.3526228 44.6356355 44.7622700 44.9276566 45.1222025
45.2366803 45.6014995 45.7235591 45.8110241 46.0490113
46.1159072 46.2972773 46.4138993 46.6709303 46.7036240
46.8810115 47.0871364 47.2024928 47.3324385 47.5607089
48.0977076 48.1181441 48.2890817 48.4501121 48.5715033
48.8358626 48.9908417 49.1774932 49.2716842 49.5792702
49.6451193 49.8182078 49.9167909 50.2453712 50.7306505
50.8270452 50.9397184 51.1422425 51.3475114 51.5018095
51.6034271 51.8902030 52.0582043 52.1747006 52.2912654
52.4884164 52.8890793 53.0450492 53.3023228 53.4551576
53.7445549 53.8684997 54.1522149 54.3642005 54.5406774
54.7999504 55.0497697 55.1453829 55.3054645 55.5703254
55.7839162 55.9134914 56.0123131 56.2839981 56.6116963
56.7764219 56.8566200 57.3397609 57.4745424 57.5783900
58.0550555 58.4294806 58.5330729 58.5871403 59.3138071
59.4778234 59.8392680 59.9949191 60.2641280 60.5083008
60.8609533 61.2695533 61.4395435 61.7298482 61.8402114
62.1576842 62.3484121 62.4736147 62.8528746 63.1775825
63.3550803 63.5809048 63.6250997 63.9255359 64.1793616
64.5593547 64.8057802 64.9994840 65.3069088 65.4800231
65.6239199 66.0259415 66.4190118 66.6541803 67.0200892
67.2134701 67.5230422 67.8332766 68.2395575 68.3898017
68.6114995 68.7561513 69.5515724 69.8309074 70.1069147
70.8676635 70.9679777 71.2810995 71.7039732 72.0266376
72.3730826 73.2546948 73.5713849 74.1048613 74.4423702
74.7174944 74.9901612 75.2908671 75.7564572 76.7050827
77.7023159 78.0414627 78.4970099 79.1215090 79.4898453
80.0732974 80.4851739 81.0020031 81.2574741 81.3456223
82.0463016 82.5351196 83.0495304 83.4650776 84.8060117
85.4067308 85.7667016 86.3672493 86.8406723 87.1659084
88.4969618 88.9162281 89.1230162 89.7427281 90.8950149
91.3731887 91.9012962 92.4923627 93.1621320 93.8258156
94.5493231 95.6194766 96.2877267 97.3611750 100.2334302
101.6031602 102.6541255 103.5730192
Diagstd> Frequencies (cm-1, if the matrix is a hessien in CHARMM units):
0.0034281 0.0034299 0.0034321 0.0034349 0.0034398
0.0034415 5.3851029 25.8341738 29.0890640 34.9411045
36.9148431 39.0091270 43.2699678 45.4044150 48.7377304
51.4136959 53.6364396 57.7332951 58.7455489 66.5364237
69.4750694 71.2794648 76.7112425 77.1435018 83.4808230
85.1324722 88.6409742 91.3221474 97.0974240 100.7334855
103.4531732 106.3819690 106.4722040 108.6608224 110.5143159
113.2925017 117.9872449 120.8981916 125.8611990 127.4607149
129.2512842 131.0481928 135.2196351 138.4254844 142.7206471
146.7896429 149.2143138 150.5516271 152.3746676 156.3443594
159.1566435 162.8587620 167.0251680 168.2762477 173.1853124
174.4235504 175.8829761 177.4289553 180.4823810 182.7714941
183.3136825 187.4163745 193.5842382 196.6563186 198.8070824
201.2610151 205.8925842 206.9116051 210.0974973 212.9586645
214.6364673 217.7309876 220.1842084 222.0114612 222.9074477
224.1402464 225.2785837 228.4563137 230.7015946 233.4701552
235.6790985 237.4729811 239.1821247 241.1903742 244.8593548
245.3339496 251.4747406 252.4103088 253.9232660 255.5654700
256.9138074 258.4939683 259.9559891 261.8466540 264.2838664
267.8473767 268.9099426 272.2555963 274.1953043 276.5569422
277.2153294 280.0913363 282.5439800 285.5052105 285.9494328
286.7133154 288.7866416 290.9185266 295.0192595 295.6497235
297.7411918 298.4160351 302.4324885 302.6513649 304.4017736
305.9734914 310.1744944 311.4426298 315.2429419 316.4990245
317.4424459 318.9354367 320.2088056 323.4296862 325.0062842
327.0796646 329.1169728 330.5590775 333.3001562 333.4820128
335.6678717 338.4695580 340.5365924 341.0502166 343.2996394
347.3396650 347.8140167 350.4761560 353.0301974 356.0803668
356.6162207 359.2181299 360.9478061 361.2032470 363.1469090
364.9868536 366.2058290 368.1475382 370.9360758 372.4265232
374.9672745 375.8286604 376.7817163 377.8702235 380.3848123
382.4382516 385.9362846 388.1401777 388.8188322 391.5300933
392.7210603 394.5880302 396.4430399 397.3941333 399.1721643
401.5820618 401.7465949 402.5198785 404.3032029 406.0294561
408.0057525 409.4614032 411.9261956 415.4754648 416.8160367
418.6881299 421.1742527 422.3099395 423.6881503 425.0986634
426.0248120 427.3470217 429.1869456 431.4172820 432.9310447
433.0679111 435.8148505 437.2771668 441.1160512 443.6621846
443.8016650 444.8738902 447.0934733 448.2161249 449.3617873
450.6690223 451.2625693 452.5806794 454.5214753 454.8089481
456.4907508 458.1913514 460.6194864 461.3151504 464.5063547
465.9699404 466.8966562 470.0946636 471.1943808 472.0697664
475.1108251 476.3157364 478.2940904 478.7502521 480.6826889
481.7979906 482.5055849 483.9100978 485.3522144 487.6932455
490.3957474 491.6549069 492.2994928 492.7718838 494.5674715
495.3137627 497.3610418 499.8771677 501.1111668 502.2856301
504.2591458 506.7712496 508.0338710 508.3183772 508.9499947
511.8536908 512.4195420 513.6968134 515.8412311 517.7481617
518.2236422 519.6349523 520.8113135 523.0894917 523.7332103
524.6485560 526.0837610 528.1749202 529.0603133 529.8697015
530.7503084 532.1565190 533.2872705 534.2935576 536.0412100
536.3826618 537.6901504 538.8571905 539.3874992 541.2085955
542.2955600 542.7622750 544.1256619 546.0119039 546.4718859
547.6398480 548.2581955 549.1513520 551.3800843 551.9396580
553.7265653 554.3396336 555.1360698 555.6722953 556.4799905
557.1771449 559.8149439 560.7231938 561.4632492 563.0478907
563.9958702 565.5813653 566.6274251 568.4212340 570.4433354
570.7193215 572.8072204 574.5044493 576.1787760 576.6431855
578.7170303 579.9060619 581.5619973 582.9438040 584.4500729
585.6967124 585.9984473 586.8117086 588.2849664 588.9636576
589.3325759 590.9400093 592.6866253 593.8563760 594.9752027
596.1212456 596.9631283 600.3806838 600.8815112 602.9509356
604.4775705 606.2349378 607.6721374 609.6331075 612.4474735
613.0956837 616.1753687 617.0962192 618.1219364 619.3406488
621.7645119 622.5130512 625.9906132 627.5651388 628.7999134
629.3162432 632.1333868 633.3680324 633.6207362 636.3076176
639.0541222 639.3224184 640.3791603 641.1736963 643.0429163
645.8044935 646.3835736 647.0841263 648.1764461 648.9342976
650.9828062 651.5527890 652.8415896 654.0371886 654.9606398
656.3948507 657.9274366 659.3515650 661.3144265 661.4486711
662.6634378 664.7221496 667.2349682 668.5086929 669.3545201
671.4589082 673.2380273 676.1346061 676.9916905 677.5353009
678.9585755 680.3426040 681.6059872 682.2070124 683.3986564
684.6623884 686.3205366 687.7811010 688.3280402 689.3339562
692.0500263 692.3127911 693.7808558 695.7692146 696.6370927
699.2331118 700.6327200 702.7155012 704.1227280 704.5971355
705.6093716 707.3178008 708.3667325 709.2650665 712.0449473
713.1557818 713.5786766 715.5092973 717.5861661 718.6419032
723.1941990 725.4978692 726.5262856 727.8672241 729.4414283
730.3661613 733.3053307 734.2860782 734.9880540 736.8947038
737.4297576 738.8784595 739.8084851 741.8541134 742.1139082
743.5219039 745.1546574 746.0668569 747.0930909 748.8924286
753.1083611 753.2683399 754.6051301 755.8622803 756.8085899
758.8653302 760.0684941 761.5150204 762.2439467 764.6194571
765.1270564 766.4597092 767.2176917 769.7386785 773.4468871
774.1813623 775.0389879 776.5781445 778.1350541 779.3033165
780.0717540 782.2362990 783.5015720 784.3777454 785.2534550
786.7323621 789.7293593 790.8929580 792.8085914 793.9443956
796.0906356 797.0080730 799.1041619 800.6667303 801.9652382
803.8691513 805.6993878 806.3987738 807.5683735 809.4998081
811.0540178 811.9954320 812.7126771 814.6813042 817.0494920
818.2373313 818.8150180 822.2866117 823.2524678 823.9958774
827.3995925 830.0634542 830.7989568 831.1825754 836.3213437
837.4768554 840.0176602 841.1094579 842.9944562 844.7005147
847.1584664 849.9974784 851.1758057 853.1843580 853.9466967
856.1358699 857.4483699 858.3088640 860.9101989 863.1311331
864.3427688 865.8818418 866.1827253 868.2253643 869.9473644
872.5189555 874.1825884 875.4880747 877.5560082 878.7183431
879.6833344 882.3737539 884.9963617 886.5617217 888.9918528
890.2734854 892.3213432 894.3688775 897.0432472 898.0302221
899.4846073 900.4322878 905.6257382 907.4425158 909.2340843
914.1539444 914.8007147 916.8166152 919.5320920 921.5986942
923.8124604 929.4221360 931.4289792 934.7998404 936.9261844
938.6559344 940.3670949 942.2506152 945.1595101 951.0587630
957.2210969 959.3078108 962.1035945 965.9231194 968.1688513
971.7155145 974.2114365 977.3343423 978.8743293 979.4051270
983.6141888 986.5399411 989.6095343 992.0822534 1000.0198024
1003.5553474 1005.6680075 1009.1827636 1011.9449065 1013.8381058
1021.5496068 1023.9666119 1025.1566145 1028.7146249 1035.2978517
1038.0174892 1041.0128702 1044.3551603 1048.1296087 1051.8564018
1055.9041392 1061.8629338 1065.5669624 1071.4901510 1087.1803064
1094.5834779 1100.2300034 1105.1433084
Diagstd> Normal end.
B-factor analysis
Bfactors> Version 1.22, Bordeaux.
Getnam> Eigenvector filename ?
Getnam> 240503173552133306.eigenfacs
Openam> file on opening on unit 10:
240503173552133306.eigenfacs
Getnam> Corresponding pdb filename ?
Getnam> 240503173552133306.atom
Openam> file on opening on unit 11:
240503173552133306.atom
Getnum> Number of skipped eigenvectors ?
Getnum> 0
Getnum> Number of usefull eigenvectors ?
Getnum> 10000
%Getnum-Err: number larger than 106 This is not allowed. Sorry.
Rdatompdb> Reading pdb file.
Rdatompdb> End of file reached.
Rdatompdb> Number of I/O errors: 0
Rdatompdb> Number of residues found = 186
First residue number = 96
Last residue number = 1291
Number of atoms found = 186
Mean number per residue = 1.0
Rdmodfacs> Old Blzpack file format detected.
Rdmodfacs> Numero du vecteur CERFACS en lecture: 1
Rdmodfacs> Valeur propre du vecteur en lecture: 9.9660E-10
Rdmodfacs> Numero du vecteur CERFACS en lecture: 2
Rdmodfacs> Valeur propre du vecteur en lecture: 9.9762E-10
Rdmodfacs> Numero du vecteur CERFACS en lecture: 3
Rdmodfacs> Valeur propre du vecteur en lecture: 9.9890E-10
Rdmodfacs> Numero du vecteur CERFACS en lecture: 4
Rdmodfacs> Valeur propre du vecteur en lecture: 1.0005E-09
Rdmodfacs> Numero du vecteur CERFACS en lecture: 5
Rdmodfacs> Valeur propre du vecteur en lecture: 1.0034E-09
Rdmodfacs> Numero du vecteur CERFACS en lecture: 6
Rdmodfacs> Valeur propre du vecteur en lecture: 1.0044E-09
Rdmodfacs> Numero du vecteur CERFACS en lecture: 7
Rdmodfacs> Valeur propre du vecteur en lecture: 2.4592E-03
Rdmodfacs> Numero du vecteur CERFACS en lecture: 8
Rdmodfacs> Valeur propre du vecteur en lecture: 5.6598E-02
Rdmodfacs> Numero du vecteur CERFACS en lecture: 9
Rdmodfacs> Valeur propre du vecteur en lecture: 7.1758E-02
Rdmodfacs> Numero du vecteur CERFACS en lecture: 10
Rdmodfacs> Valeur propre du vecteur en lecture: 0.1035
Rdmodfacs> Numero du vecteur CERFACS en lecture: 11
Rdmodfacs> Valeur propre du vecteur en lecture: 0.1156
Rdmodfacs> Numero du vecteur CERFACS en lecture: 12
Rdmodfacs> Valeur propre du vecteur en lecture: 0.1290
Rdmodfacs> Numero du vecteur CERFACS en lecture: 13
Rdmodfacs> Valeur propre du vecteur en lecture: 0.1588
Rdmodfacs> Numero du vecteur CERFACS en lecture: 14
Rdmodfacs> Valeur propre du vecteur en lecture: 0.1748
Rdmodfacs> Numero du vecteur CERFACS en lecture: 15
Rdmodfacs> Valeur propre du vecteur en lecture: 0.2014
Rdmodfacs> Numero du vecteur CERFACS en lecture: 16
Rdmodfacs> Valeur propre du vecteur en lecture: 0.2242
Rdmodfacs> Numero du vecteur CERFACS en lecture: 17
Rdmodfacs> Valeur propre du vecteur en lecture: 0.2440
Rdmodfacs> Numero du vecteur CERFACS en lecture: 18
Rdmodfacs> Valeur propre du vecteur en lecture: 0.2827
Rdmodfacs> Numero du vecteur CERFACS en lecture: 19
Rdmodfacs> Valeur propre du vecteur en lecture: 0.2927
Rdmodfacs> Numero du vecteur CERFACS en lecture: 20
Rdmodfacs> Valeur propre du vecteur en lecture: 0.3754
Rdmodfacs> Numero du vecteur CERFACS en lecture: 21
Rdmodfacs> Valeur propre du vecteur en lecture: 0.4093
Rdmodfacs> Numero du vecteur CERFACS en lecture: 22
Rdmodfacs> Valeur propre du vecteur en lecture: 0.4309
Rdmodfacs> Numero du vecteur CERFACS en lecture: 23
Rdmodfacs> Valeur propre du vecteur en lecture: 0.4990
Rdmodfacs> Numero du vecteur CERFACS en lecture: 24
Rdmodfacs> Valeur propre du vecteur en lecture: 0.5047
Rdmodfacs> Numero du vecteur CERFACS en lecture: 25
Rdmodfacs> Valeur propre du vecteur en lecture: 0.5910
Rdmodfacs> Numero du vecteur CERFACS en lecture: 26
Rdmodfacs> Valeur propre du vecteur en lecture: 0.6146
Rdmodfacs> Numero du vecteur CERFACS en lecture: 27
Rdmodfacs> Valeur propre du vecteur en lecture: 0.6663
Rdmodfacs> Numero du vecteur CERFACS en lecture: 28
Rdmodfacs> Valeur propre du vecteur en lecture: 0.7072
Rdmodfacs> Numero du vecteur CERFACS en lecture: 29
Rdmodfacs> Valeur propre du vecteur en lecture: 0.7995
Rdmodfacs> Numero du vecteur CERFACS en lecture: 30
Rdmodfacs> Valeur propre du vecteur en lecture: 0.8605
Rdmodfacs> Numero du vecteur CERFACS en lecture: 31
Rdmodfacs> Valeur propre du vecteur en lecture: 0.9076
Rdmodfacs> Numero du vecteur CERFACS en lecture: 32
Rdmodfacs> Valeur propre du vecteur en lecture: 0.9597
Rdmodfacs> Numero du vecteur CERFACS en lecture: 33
Rdmodfacs> Valeur propre du vecteur en lecture: 0.9614
Rdmodfacs> Numero du vecteur CERFACS en lecture: 34
Rdmodfacs> Valeur propre du vecteur en lecture: 1.001
Rdmodfacs> Numero du vecteur CERFACS en lecture: 35
Rdmodfacs> Valeur propre du vecteur en lecture: 1.036
Rdmodfacs> Numero du vecteur CERFACS en lecture: 36
Rdmodfacs> Valeur propre du vecteur en lecture: 1.088
Rdmodfacs> Numero du vecteur CERFACS en lecture: 37
Rdmodfacs> Valeur propre du vecteur en lecture: 1.181
Rdmodfacs> Numero du vecteur CERFACS en lecture: 38
Rdmodfacs> Valeur propre du vecteur en lecture: 1.240
Rdmodfacs> Numero du vecteur CERFACS en lecture: 39
Rdmodfacs> Valeur propre du vecteur en lecture: 1.343
Rdmodfacs> Numero du vecteur CERFACS en lecture: 40
Rdmodfacs> Valeur propre du vecteur en lecture: 1.378
Rdmodfacs> Numero du vecteur CERFACS en lecture: 41
Rdmodfacs> Valeur propre du vecteur en lecture: 1.417
Rdmodfacs> Numero du vecteur CERFACS en lecture: 42
Rdmodfacs> Valeur propre du vecteur en lecture: 1.456
Rdmodfacs> Numero du vecteur CERFACS en lecture: 43
Rdmodfacs> Valeur propre du vecteur en lecture: 1.551
Rdmodfacs> Numero du vecteur CERFACS en lecture: 44
Rdmodfacs> Valeur propre du vecteur en lecture: 1.625
Rdmodfacs> Numero du vecteur CERFACS en lecture: 45
Rdmodfacs> Valeur propre du vecteur en lecture: 1.727
Rdmodfacs> Numero du vecteur CERFACS en lecture: 46
Rdmodfacs> Valeur propre du vecteur en lecture: 1.827
Rdmodfacs> Numero du vecteur CERFACS en lecture: 47
Rdmodfacs> Valeur propre du vecteur en lecture: 1.888
Rdmodfacs> Numero du vecteur CERFACS en lecture: 48
Rdmodfacs> Valeur propre du vecteur en lecture: 1.922
Rdmodfacs> Numero du vecteur CERFACS en lecture: 49
Rdmodfacs> Valeur propre du vecteur en lecture: 1.969
Rdmodfacs> Numero du vecteur CERFACS en lecture: 50
Rdmodfacs> Valeur propre du vecteur en lecture: 2.073
Rdmodfacs> Numero du vecteur CERFACS en lecture: 51
Rdmodfacs> Valeur propre du vecteur en lecture: 2.148
Rdmodfacs> Numero du vecteur CERFACS en lecture: 52
Rdmodfacs> Valeur propre du vecteur en lecture: 2.249
Rdmodfacs> Numero du vecteur CERFACS en lecture: 53
Rdmodfacs> Valeur propre du vecteur en lecture: 2.366
Rdmodfacs> Numero du vecteur CERFACS en lecture: 54
Rdmodfacs> Valeur propre du vecteur en lecture: 2.401
Rdmodfacs> Numero du vecteur CERFACS en lecture: 55
Rdmodfacs> Valeur propre du vecteur en lecture: 2.543
Rdmodfacs> Numero du vecteur CERFACS en lecture: 56
Rdmodfacs> Valeur propre du vecteur en lecture: 2.580
Rdmodfacs> Numero du vecteur CERFACS en lecture: 57
Rdmodfacs> Valeur propre du vecteur en lecture: 2.623
Rdmodfacs> Numero du vecteur CERFACS en lecture: 58
Rdmodfacs> Valeur propre du vecteur en lecture: 2.670
Rdmodfacs> Numero du vecteur CERFACS en lecture: 59
Rdmodfacs> Valeur propre du vecteur en lecture: 2.762
Rdmodfacs> Numero du vecteur CERFACS en lecture: 60
Rdmodfacs> Valeur propre du vecteur en lecture: 2.833
Rdmodfacs> Numero du vecteur CERFACS en lecture: 61
Rdmodfacs> Valeur propre du vecteur en lecture: 2.850
Rdmodfacs> Numero du vecteur CERFACS en lecture: 62
Rdmodfacs> Valeur propre du vecteur en lecture: 2.979
Rdmodfacs> Numero du vecteur CERFACS en lecture: 63
Rdmodfacs> Valeur propre du vecteur en lecture: 3.178
Rdmodfacs> Numero du vecteur CERFACS en lecture: 64
Rdmodfacs> Valeur propre du vecteur en lecture: 3.280
Rdmodfacs> Numero du vecteur CERFACS en lecture: 65
Rdmodfacs> Valeur propre du vecteur en lecture: 3.352
Rdmodfacs> Numero du vecteur CERFACS en lecture: 66
Rdmodfacs> Valeur propre du vecteur en lecture: 3.435
Rdmodfacs> Numero du vecteur CERFACS en lecture: 67
Rdmodfacs> Valeur propre du vecteur en lecture: 3.595
Rdmodfacs> Numero du vecteur CERFACS en lecture: 68
Rdmodfacs> Valeur propre du vecteur en lecture: 3.631
Rdmodfacs> Numero du vecteur CERFACS en lecture: 69
Rdmodfacs> Valeur propre du vecteur en lecture: 3.743
Rdmodfacs> Numero du vecteur CERFACS en lecture: 70
Rdmodfacs> Valeur propre du vecteur en lecture: 3.846
Rdmodfacs> Numero du vecteur CERFACS en lecture: 71
Rdmodfacs> Valeur propre du vecteur en lecture: 3.907
Rdmodfacs> Numero du vecteur CERFACS en lecture: 72
Rdmodfacs> Valeur propre du vecteur en lecture: 4.020
Rdmodfacs> Numero du vecteur CERFACS en lecture: 73
Rdmodfacs> Valeur propre du vecteur en lecture: 4.111
Rdmodfacs> Numero du vecteur CERFACS en lecture: 74
Rdmodfacs> Valeur propre du vecteur en lecture: 4.180
Rdmodfacs> Numero du vecteur CERFACS en lecture: 75
Rdmodfacs> Valeur propre du vecteur en lecture: 4.214
Rdmodfacs> Numero du vecteur CERFACS en lecture: 76
Rdmodfacs> Valeur propre du vecteur en lecture: 4.260
Rdmodfacs> Numero du vecteur CERFACS en lecture: 77
Rdmodfacs> Valeur propre du vecteur en lecture: 4.304
Rdmodfacs> Numero du vecteur CERFACS en lecture: 78
Rdmodfacs> Valeur propre du vecteur en lecture: 4.426
Rdmodfacs> Numero du vecteur CERFACS en lecture: 79
Rdmodfacs> Valeur propre du vecteur en lecture: 4.513
Rdmodfacs> Numero du vecteur CERFACS en lecture: 80
Rdmodfacs> Valeur propre du vecteur en lecture: 4.622
Rdmodfacs> Numero du vecteur CERFACS en lecture: 81
Rdmodfacs> Valeur propre du vecteur en lecture: 4.710
Rdmodfacs> Numero du vecteur CERFACS en lecture: 82
Rdmodfacs> Valeur propre du vecteur en lecture: 4.782
Rdmodfacs> Numero du vecteur CERFACS en lecture: 83
Rdmodfacs> Valeur propre du vecteur en lecture: 4.851
Rdmodfacs> Numero du vecteur CERFACS en lecture: 84
Rdmodfacs> Valeur propre du vecteur en lecture: 4.933
Rdmodfacs> Numero du vecteur CERFACS en lecture: 85
Rdmodfacs> Valeur propre du vecteur en lecture: 5.084
Rdmodfacs> Numero du vecteur CERFACS en lecture: 86
Rdmodfacs> Valeur propre du vecteur en lecture: 5.104
Rdmodfacs> Numero du vecteur CERFACS en lecture: 87
Rdmodfacs> Valeur propre du vecteur en lecture: 5.363
Rdmodfacs> Numero du vecteur CERFACS en lecture: 88
Rdmodfacs> Valeur propre du vecteur en lecture: 5.403
Rdmodfacs> Numero du vecteur CERFACS en lecture: 89
Rdmodfacs> Valeur propre du vecteur en lecture: 5.468
Rdmodfacs> Numero du vecteur CERFACS en lecture: 90
Rdmodfacs> Valeur propre du vecteur en lecture: 5.539
Rdmodfacs> Numero du vecteur CERFACS en lecture: 91
Rdmodfacs> Valeur propre du vecteur en lecture: 5.597
Rdmodfacs> Numero du vecteur CERFACS en lecture: 92
Rdmodfacs> Valeur propre du vecteur en lecture: 5.666
Rdmodfacs> Numero du vecteur CERFACS en lecture: 93
Rdmodfacs> Valeur propre du vecteur en lecture: 5.731
Rdmodfacs> Numero du vecteur CERFACS en lecture: 94
Rdmodfacs> Valeur propre du vecteur en lecture: 5.814
Rdmodfacs> Numero du vecteur CERFACS en lecture: 95
Rdmodfacs> Valeur propre du vecteur en lecture: 5.923
Rdmodfacs> Numero du vecteur CERFACS en lecture: 96
Rdmodfacs> Valeur propre du vecteur en lecture: 6.084
Rdmodfacs> Numero du vecteur CERFACS en lecture: 97
Rdmodfacs> Valeur propre du vecteur en lecture: 6.132
Rdmodfacs> Numero du vecteur CERFACS en lecture: 98
Rdmodfacs> Valeur propre du vecteur en lecture: 6.286
Rdmodfacs> Numero du vecteur CERFACS en lecture: 99
Rdmodfacs> Valeur propre du vecteur en lecture: 6.376
Rdmodfacs> Numero du vecteur CERFACS en lecture: 100
Rdmodfacs> Valeur propre du vecteur en lecture: 6.486
Rdmodfacs> Numero du vecteur CERFACS en lecture: 101
Rdmodfacs> Valeur propre du vecteur en lecture: 6.517
Rdmodfacs> Numero du vecteur CERFACS en lecture: 102
Rdmodfacs> Valeur propre du vecteur en lecture: 6.653
Rdmodfacs> Numero du vecteur CERFACS en lecture: 103
Rdmodfacs> Valeur propre du vecteur en lecture: 6.770
Rdmodfacs> Numero du vecteur CERFACS en lecture: 104
Rdmodfacs> Valeur propre du vecteur en lecture: 6.913
Rdmodfacs> Numero du vecteur CERFACS en lecture: 105
Rdmodfacs> Valeur propre du vecteur en lecture: 6.934
Rdmodfacs> Numero du vecteur CERFACS en lecture: 106
Rdmodfacs> Valeur propre du vecteur en lecture: 6.971
%Rdmodfacs-Wn> More than 106 vectors in file.
Bfactors> 106 vectors, 558 coordinates in file.
Openam> file on opening on unit 12:
bfactors.pred
Bfactors> Best zero-eigenvalue found : 0.000000
Bfactors> 6 eigenvalues less than : 0.000000
Bfactors> Lowest non-zero eigenvalue : 0.002459
Bfactors> 100 eigenvectors will be considered.
Bfactors> Rotation-Tranlation modes are skipped.
Bfactors> Mass-weighted B-factors are computed.
(CHARMM units assumed for eigenvalues)
Bfactors> Correlation= 0.104 for 185 C-alpha atoms.
Bfactors> = 45.788 +/- 255.32
Bfactors> = 27.528 +/- 13.47
Bfactors> Shiftng-fct= -18.260
Bfactors> Scaling-fct= 0.053
Bfactors> Predicted, Scaled and Experimental B-factors are saved.
Bfactors> Normal end.
check_modes
getting mode 7
running: ../../bin/get_modes.sh 240503173552133306 7 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 7
calculating perturbed structure for DQ=-100
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-80
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-60
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-40
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-20
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=0
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=20
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=40
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=60
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=80
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=100
240503173552133306.eigenfacs
240503173552133306.atom
making animated gifs
11 models are in 240503173552133306.7.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240503173552133306.7.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240503173552133306.7.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 8
running: ../../bin/get_modes.sh 240503173552133306 8 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 8
calculating perturbed structure for DQ=-100
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-80
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-60
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-40
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-20
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=0
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=20
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=40
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=60
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=80
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=100
240503173552133306.eigenfacs
240503173552133306.atom
making animated gifs
11 models are in 240503173552133306.8.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240503173552133306.8.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240503173552133306.8.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 9
running: ../../bin/get_modes.sh 240503173552133306 9 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 9
calculating perturbed structure for DQ=-100
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-80
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-60
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-40
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-20
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=0
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=20
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=40
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=60
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=80
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=100
240503173552133306.eigenfacs
240503173552133306.atom
making animated gifs
11 models are in 240503173552133306.9.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240503173552133306.9.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240503173552133306.9.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 10
running: ../../bin/get_modes.sh 240503173552133306 10 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 10
calculating perturbed structure for DQ=-100
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-80
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-60
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-40
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-20
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=0
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=20
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=40
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=60
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=80
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=100
240503173552133306.eigenfacs
240503173552133306.atom
making animated gifs
11 models are in 240503173552133306.10.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240503173552133306.10.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240503173552133306.10.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 11
running: ../../bin/get_modes.sh 240503173552133306 11 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 11
calculating perturbed structure for DQ=-100
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-80
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-60
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-40
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-20
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=0
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=20
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=40
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=60
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=80
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=100
240503173552133306.eigenfacs
240503173552133306.atom
making animated gifs
11 models are in 240503173552133306.11.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240503173552133306.11.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240503173552133306.11.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 12
running: ../../bin/get_modes.sh 240503173552133306 12 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 12
calculating perturbed structure for DQ=-100
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-80
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-60
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-40
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-20
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=0
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=20
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=40
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=60
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=80
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=100
240503173552133306.eigenfacs
240503173552133306.atom
making animated gifs
11 models are in 240503173552133306.12.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240503173552133306.12.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240503173552133306.12.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 13
running: ../../bin/get_modes.sh 240503173552133306 13 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 13
calculating perturbed structure for DQ=-100
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-80
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-60
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-40
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-20
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=0
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=20
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=40
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=60
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=80
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=100
240503173552133306.eigenfacs
240503173552133306.atom
making animated gifs
11 models are in 240503173552133306.13.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240503173552133306.13.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240503173552133306.13.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 14
running: ../../bin/get_modes.sh 240503173552133306 14 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 14
calculating perturbed structure for DQ=-100
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-80
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-60
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-40
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-20
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=0
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=20
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=40
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=60
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=80
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=100
240503173552133306.eigenfacs
240503173552133306.atom
making animated gifs
11 models are in 240503173552133306.14.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240503173552133306.14.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240503173552133306.14.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 15
running: ../../bin/get_modes.sh 240503173552133306 15 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 15
calculating perturbed structure for DQ=-100
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-80
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-60
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-40
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-20
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=0
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=20
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=40
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=60
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=80
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=100
240503173552133306.eigenfacs
240503173552133306.atom
making animated gifs
11 models are in 240503173552133306.15.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240503173552133306.15.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240503173552133306.15.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 16
running: ../../bin/get_modes.sh 240503173552133306 16 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 16
calculating perturbed structure for DQ=-100
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-80
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-60
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-40
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=-20
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=0
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=20
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=40
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=60
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=80
240503173552133306.eigenfacs
240503173552133306.atom
calculating perturbed structure for DQ=100
240503173552133306.eigenfacs
240503173552133306.atom
making animated gifs
11 models are in 240503173552133306.16.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240503173552133306.16.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240503173552133306.16.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
240503173552133306.10.pdb
240503173552133306.11.pdb
240503173552133306.12.pdb
240503173552133306.13.pdb
240503173552133306.14.pdb
240503173552133306.15.pdb
240503173552133306.16.pdb
240503173552133306.7.pdb
240503173552133306.8.pdb
240503173552133306.9.pdb
STDERR:
real 0m2.519s
user 0m2.497s
sys 0m0.008s
../../bin/check_modes: error while loading shared libraries: libgfortran.so.3: cannot open shared object file: No such file or directory
mv: cannot stat 'Chkmod.res': No such file or directory
cat: 240503173552133306.Chkmod.res: No such file or directory
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
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pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
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pstopnm: Writing ppmraw format
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pstopnm: Writing ppmraw format
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pstopnm: Writing ppmraw format
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pstopnm: Writing ppmraw format
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pstopnm: Writing ppmraw format
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pstopnm: Writing ppmraw format
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pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
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pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
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pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
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pstopnm: Writing ppmraw format
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pstopnm: Writing ppmraw format
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.
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