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CA strain for EXAMPLE1

---  normal mode 9  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
PRO 1GLN 2 0.0138
GLN 2ILE 3 -0.0446
ILE 3THR 4 0.0790
THR 4LEU 5 0.0447
LEU 5TRP 6 -0.0614
TRP 6GLN 7 0.0147
GLN 7ARG 8 -0.0519
ARG 8PRO 9 0.0087
PRO 9LEU 10 -0.0126
LEU 10VAL 11 0.0345
VAL 11THR 12 0.0265
THR 12ILE 13 0.0052
ILE 13LYS 14 0.0077
LYS 14ILE 15 0.0064
ILE 15GLY 16 0.0043
GLY 16GLY 17 0.0107
GLY 17GLN 18 -0.0027
GLN 18LEU 19 0.0163
LEU 19LYS 20 -0.0015
LYS 20GLU 21 0.0263
GLU 21ALA 22 0.0001
ALA 22LEU 23 0.0010
LEU 23LEU 24 0.0068
LEU 24ASP 25 0.0010
ASP 25THR 26 0.0338
THR 26GLY 27 -0.0030
GLY 27ALA 28 0.0065
ALA 28ASP 29 0.0010
ASP 29ASP 30 -0.0063
ASP 30THR 31 0.0023
THR 31VAL 32 0.0098
VAL 32LEU 33 -0.0015
LEU 33GLU 34 0.0009
GLU 34GLU 35 0.0007
GLU 35MET 36 -0.0063
MET 36SER 37 -0.0002
SER 37LEU 38 -0.0089
LEU 38PRO 39 -0.0009
PRO 39GLY 40 0.0100
GLY 40ARG 41 0.0094
ARG 41TRP 42 0.0015
TRP 42LYS 43 0.0017
LYS 43PRO 44 0.0113
PRO 44LYS 45 -0.0072
LYS 45MET 46 0.0242
MET 46ILE 47 -0.0137
ILE 47GLY 48 -0.0001
GLY 48GLY 49 -0.0037
GLY 49ILE 50 0.0123
ILE 50GLY 51 -0.0027
GLY 51GLY 52 0.0090
GLY 52PHE 53 0.0194
PHE 53ILE 54 -0.0166
ILE 54LYS 55 0.0043
LYS 55VAL 56 0.0023
VAL 56ARG 57 0.0038
ARG 57GLN 58 0.0054
GLN 58TYR 59 0.0121
TYR 59ASP 60 -0.0034
ASP 60GLN 61 0.0145
GLN 61ILE 62 -0.0039
ILE 62LEU 63 0.0215
LEU 63ILE 64 0.0031
ILE 64GLU 65 0.0070
GLU 65ILE 66 0.0010
ILE 66CYS 67 0.0050
CYS 67GLY 68 0.0113
GLY 68HIS 69 -0.0111
HIS 69LYS 70 0.0324
LYS 70ALA 71 -0.0003
ALA 71ILE 72 0.0130
ILE 72GLY 73 0.0035
GLY 73THR 74 0.0112
THR 74VAL 75 0.0017
VAL 75LEU 76 0.0057
LEU 76VAL 77 0.0014
VAL 77GLY 78 0.0005
GLY 78PRO 79 0.0035
PRO 79THR 80 0.0021
THR 80PRO 81 0.0213
PRO 81VAL 82 -0.0195
VAL 82ASN 83 -0.0026
ASN 83ILE 84 0.0117
ILE 84ILE 85 0.0085
ILE 85GLY 86 0.0054
GLY 86ARG 87 0.0066
ARG 87ASN 88 -0.0163
ASN 88LEU 89 0.0003
LEU 89LEU 90 -0.0037
LEU 90THR 91 -0.0007
THR 91GLN 92 -0.0035
GLN 92ILE 93 0.0058
ILE 93GLY 94 -0.0171
GLY 94CYS 95 0.0118
CYS 95THR 96 -0.0058
THR 96LEU 97 -0.0070
LEU 97ASN 98 0.0074
ASN 98PHE 99 0.0036

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.