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CA strain for EXAMPLE1

---  normal mode 7  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
PRO 1GLN 2 0.1796
GLN 2ILE 3 0.0689
ILE 3THR 4 -0.0756
THR 4LEU 5 -0.0683
LEU 5TRP 6 0.0106
TRP 6GLN 7 -0.0007
GLN 7ARG 8 -0.0147
ARG 8PRO 9 -0.0201
PRO 9LEU 10 0.0720
LEU 10VAL 11 -0.0287
VAL 11THR 12 0.0522
THR 12ILE 13 -0.0029
ILE 13LYS 14 0.0096
LYS 14ILE 15 0.0160
ILE 15GLY 16 0.0080
GLY 16GLY 17 0.0156
GLY 17GLN 18 -0.0049
GLN 18LEU 19 0.0344
LEU 19LYS 20 -0.0058
LYS 20GLU 21 0.0482
GLU 21ALA 22 -0.0156
ALA 22LEU 23 -0.0132
LEU 23LEU 24 0.0214
LEU 24ASP 25 -0.0033
ASP 25THR 26 -0.0113
THR 26GLY 27 -0.0407
GLY 27ALA 28 -0.0339
ALA 28ASP 29 0.0093
ASP 29ASP 30 -0.0286
ASP 30THR 31 0.0053
THR 31VAL 32 0.0017
VAL 32LEU 33 -0.0137
LEU 33GLU 34 -0.0029
GLU 34GLU 35 0.0073
GLU 35MET 36 -0.0105
MET 36SER 37 0.0020
SER 37LEU 38 -0.0184
LEU 38PRO 39 -0.0002
PRO 39GLY 40 0.0208
GLY 40ARG 41 0.0215
ARG 41TRP 42 0.0025
TRP 42LYS 43 0.0045
LYS 43PRO 44 0.0074
PRO 44LYS 45 -0.0133
LYS 45MET 46 0.0208
MET 46ILE 47 -0.0141
ILE 47GLY 48 0.0178
GLY 48GLY 49 0.0086
GLY 49ILE 50 0.0253
ILE 50GLY 51 -0.0088
GLY 51GLY 52 0.0055
GLY 52PHE 53 0.0049
PHE 53ILE 54 -0.0004
ILE 54LYS 55 -0.0084
LYS 55VAL 56 0.0001
VAL 56ARG 57 0.0043
ARG 57GLN 58 0.0075
GLN 58TYR 59 0.0131
TYR 59ASP 60 -0.0006
ASP 60GLN 61 0.0111
GLN 61ILE 62 -0.0012
ILE 62LEU 63 0.0226
LEU 63ILE 64 0.0091
ILE 64GLU 65 0.0172
GLU 65ILE 66 0.0018
ILE 66CYS 67 0.0561
CYS 67GLY 68 0.0085
GLY 68HIS 69 -0.0016
HIS 69LYS 70 -0.0043
LYS 70ALA 71 0.0024
ALA 71ILE 72 -0.0010
ILE 72GLY 73 0.0068
GLY 73THR 74 0.0073
THR 74VAL 75 0.0050
VAL 75LEU 76 0.0078
LEU 76VAL 77 -0.0118
VAL 77GLY 78 -0.0012
GLY 78PRO 79 -0.0039
PRO 79THR 80 0.0078
THR 80PRO 81 0.0122
PRO 81VAL 82 0.0082
VAL 82ASN 83 -0.0050
ASN 83ILE 84 -0.0044
ILE 84ILE 85 0.0084
ILE 85GLY 86 0.0091
GLY 86ARG 87 0.0029
ARG 87ASN 88 -0.0250
ASN 88LEU 89 0.0149
LEU 89LEU 90 -0.0390
LEU 90THR 91 0.0301
THR 91GLN 92 -0.0354
GLN 92ILE 93 0.0069
ILE 93GLY 94 -0.0730
GLY 94CYS 95 0.0214
CYS 95THR 96 -0.0164
THR 96LEU 97 -0.1109
LEU 97ASN 98 0.0320
ASN 98PHE 99 -0.0027

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.