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CA strain for EXAMPLE1

---  normal mode 10  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
PRO 1GLN 2 0.0060
GLN 2ILE 3 -0.0268
ILE 3THR 4 0.0179
THR 4LEU 5 0.0036
LEU 5TRP 6 0.0305
TRP 6GLN 7 -0.0257
GLN 7ARG 8 -0.0039
ARG 8PRO 9 0.0226
PRO 9LEU 10 -0.0254
LEU 10VAL 11 0.0113
VAL 11THR 12 -0.0077
THR 12ILE 13 0.0026
ILE 13LYS 14 -0.0010
LYS 14ILE 15 -0.0007
ILE 15GLY 16 -0.0023
GLY 16GLY 17 -0.0032
GLY 17GLN 18 0.0033
GLN 18LEU 19 -0.0083
LEU 19LYS 20 0.0028
LYS 20GLU 21 -0.0193
GLU 21ALA 22 0.0103
ALA 22LEU 23 0.0109
LEU 23LEU 24 -0.0019
LEU 24ASP 25 -0.0217
ASP 25THR 26 0.0247
THR 26GLY 27 0.0298
GLY 27ALA 28 0.0354
ALA 28ASP 29 -0.0126
ASP 29ASP 30 0.0165
ASP 30THR 31 0.0014
THR 31VAL 32 -0.0092
VAL 32LEU 33 -0.0002
LEU 33GLU 34 0.0040
GLU 34GLU 35 -0.0093
GLU 35MET 36 0.0097
MET 36SER 37 -0.0038
SER 37LEU 38 0.0030
LEU 38PRO 39 0.0011
PRO 39GLY 40 -0.0068
GLY 40ARG 41 -0.0084
ARG 41TRP 42 0.0014
TRP 42LYS 43 -0.0047
LYS 43PRO 44 0.0128
PRO 44LYS 45 0.0014
LYS 45MET 46 -0.0008
MET 46ILE 47 -0.0026
ILE 47GLY 48 -0.0682
GLY 48GLY 49 -0.0314
GLY 49ILE 50 -0.0540
ILE 50GLY 51 0.0190
GLY 51GLY 52 -0.0023
GLY 52PHE 53 0.0340
PHE 53ILE 54 -0.0172
ILE 54LYS 55 0.0529
LYS 55VAL 56 0.0051
VAL 56ARG 57 0.0068
ARG 57GLN 58 0.0017
GLN 58TYR 59 -0.0025
TYR 59ASP 60 -0.0027
ASP 60GLN 61 0.0009
GLN 61ILE 62 -0.0006
ILE 62LEU 63 0.0049
LEU 63ILE 64 -0.0002
ILE 64GLU 65 0.0008
GLU 65ILE 66 -0.0010
ILE 66CYS 67 -0.0082
CYS 67GLY 68 0.0036
GLY 68HIS 69 -0.0134
HIS 69LYS 70 0.0291
LYS 70ALA 71 0.0009
ALA 71ILE 72 0.0068
ILE 72GLY 73 0.0008
GLY 73THR 74 -0.0062
THR 74VAL 75 -0.0027
VAL 75LEU 76 -0.0142
LEU 76VAL 77 0.0053
VAL 77GLY 78 0.0018
GLY 78PRO 79 -0.0004
PRO 79THR 80 -0.0127
THR 80PRO 81 0.0030
PRO 81VAL 82 -0.0159
VAL 82ASN 83 0.0013
ASN 83ILE 84 0.0108
ILE 84ILE 85 -0.0038
ILE 85GLY 86 -0.0052
GLY 86ARG 87 -0.0017
ARG 87ASN 88 0.0164
ASN 88LEU 89 -0.0048
LEU 89LEU 90 0.0049
LEU 90THR 91 0.0061
THR 91GLN 92 0.0045
GLN 92ILE 93 0.0053
ILE 93GLY 94 -0.0145
GLY 94CYS 95 0.0343
CYS 95THR 96 -0.0606
THR 96LEU 97 -0.0000
LEU 97ASN 98 0.0640
ASN 98PHE 99 0.0125

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.