CNRS Nantes University US2B US2B
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***  UBIQUITIN  ***

CA strain for 2405231012312834919

---  normal mode 8  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
MET 1GLN 2 0.0264
GLN 2ILE 3 0.0199
ILE 3PHE 4 0.0140
PHE 4VAL 5 -0.0103
VAL 5LYS 6 0.0087
LYS 6THR 7 -0.0258
THR 7LEU 8 0.0369
LEU 8THR 9 -0.0405
THR 9GLY 10 -0.0440
GLY 10LYS 11 0.0560
LYS 11THR 12 0.0176
THR 12ILE 13 0.0014
ILE 13THR 14 -0.0114
THR 14LEU 15 0.0343
LEU 15GLU 16 -0.0098
GLU 16VAL 17 0.0181
VAL 17GLU 18 0.0204
GLU 18PRO 19 -0.0144
PRO 19SER 20 0.0083
SER 20ASP 21 -0.0211
ASP 21THR 22 0.0276
THR 22ILE 23 0.0083
ILE 23GLU 24 -0.0233
GLU 24ASN 25 0.0012
ASN 25VAL 26 0.0117
VAL 26LYS 27 -0.0383
LYS 27ALA 28 0.0519
ALA 28LYS 29 -0.0520
LYS 29ILE 30 -0.0531
ILE 30GLN 31 0.0076
GLN 31ASP 32 -0.0515
ASP 32LYS 33 0.0028
LYS 33GLU 34 -0.0197
GLU 34GLY 35 -0.0082
GLY 35ILE 36 -0.0035
ILE 36PRO 37 0.0477
PRO 37PRO 38 0.0104
PRO 38ASP 39 -0.0738
ASP 39GLN 40 0.0786
GLN 40GLN 41 -0.0933
GLN 41ARG 42 0.0347
ARG 42LEU 43 0.3110
LEU 43ILE 44 0.0090
ILE 44PHE 45 0.0806
PHE 45ALA 46 -0.0132
ALA 46GLY 47 -0.0135
GLY 47LYS 48 -0.0352
LYS 48GLN 49 0.1596
GLN 49LEU 50 0.0341
LEU 50GLU 51 -0.0641
GLU 51ASP 52 -0.0195
ASP 52GLY 53 0.0651
GLY 53ARG 54 0.0088
ARG 54THR 55 0.0067
THR 55LEU 56 -0.0002
LEU 56SER 57 -0.0052
SER 57ASP 58 0.0008
ASP 58TYR 59 -0.0093
TYR 59ASN 60 0.0711
ASN 60ILE 61 -0.0167
ILE 61GLN 62 0.0265
GLN 62LYS 63 0.0094
LYS 63GLU 64 -0.0073
GLU 64SER 65 0.0269
SER 65THR 66 0.0021
THR 66LEU 67 0.0184
LEU 67HIS 68 0.0189
HIS 68LEU 69 -0.0164
LEU 69VAL 70 0.0738
VAL 70LEU 71 0.0383
LEU 71ARG 72 0.0721
ARG 72LEU 73 0.1084
LEU 73ARG 74 -0.0676
ARG 74GLY 75 -0.0564
GLY 75GLY 76 0.1469

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.