CNRS Nantes University UFIP UFIP
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.


***  pdz  ***

CA strain for 23011717530784080

---  normal mode 9  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
GLY 1GLY 2 0.1090
GLY 2SER 3 0.1195
SER 3MET 4 0.1135
MET 4ARG 5 -0.0147
ARG 5PRO 6 0.0295
PRO 6PRO 7 0.0923
PRO 7ILE 8 -0.0010
ILE 8ILE 9 0.0373
ILE 9ILE 10 0.0205
ILE 10HIS 11 0.0469
HIS 11ARG 12 0.0366
ARG 12ALA 13 -0.0211
ALA 13GLY 14 -0.0013
GLY 14LYS 15 0.0096
LYS 15LYS 16 -0.0229
LYS 16TYR 17 0.0065
TYR 17GLY 18 0.0220
GLY 18PHE 19 -0.0584
PHE 19THR 20 -0.0778
THR 20LEU 21 -0.0184
LEU 21ARG 22 0.0216
ARG 22ALA 23 -0.1206
ALA 23ILE 24 -0.0295
ILE 24ARG 25 -0.1334
ARG 25VAL 26 0.0076
VAL 26TYR 27 0.1400
TYR 27MET 28 -0.1027
MET 28GLY 29 0.1506
GLY 29ASP 30 0.0860
ASP 30SER 31 -0.0016
SER 31ASP 32 -0.0437
ASP 32VAL 33 0.0511
VAL 33TYR 34 -0.0068
TYR 34THR 35 0.1920
THR 35VAL 36 -0.0671
VAL 36HIS 37 0.0356
HIS 37HIS 38 0.0691
HIS 38MET 39 0.0179
MET 39VAL 40 0.0403
VAL 40TRP 41 -0.0213
TRP 41HIS 42 -0.0059
HIS 42VAL 43 -0.0160
VAL 43GLU 44 -0.0011
GLU 44ASP 45 -0.0033
ASP 45GLY 46 0.0155
GLY 46GLY 47 -0.0136
GLY 47PRO 48 -0.0238
PRO 48ALA 49 0.0378
ALA 49SER 50 -0.0098
SER 50GLU 51 0.0106
GLU 51ALA 52 -0.0166
ALA 52GLY 53 0.0143
GLY 53LEU 54 0.0071
LEU 54ARG 55 -0.0401
ARG 55GLN 56 0.0203
GLN 56GLY 57 0.0681
GLY 57ASP 58 -0.0823
ASP 58LEU 59 0.1608
LEU 59ILE 60 -0.0262
ILE 60THR 61 -0.0002
THR 61HIS 62 -0.0097
HIS 62VAL 63 0.0257
VAL 63ASN 64 0.0174
ASN 64GLY 65 0.0418
GLY 65GLU 66 0.0018
GLU 66PRO 67 0.0398
PRO 67VAL 68 -0.0171
VAL 68HIS 69 0.0404
HIS 69GLY 70 0.0176
GLY 70LEU 71 -0.0450
LEU 71VAL 72 0.0629
VAL 72HIS 73 0.0775
HIS 73THR 74 -0.0926
THR 74GLU 75 0.0840
GLU 75VAL 76 0.0064
VAL 76VAL 77 -0.0071
VAL 77GLU 78 0.0780
GLU 78LEU 79 0.0153
LEU 79ILE 80 -0.0280
ILE 80LEU 81 0.0424
LEU 81LYS 82 0.0150
LYS 82SER 83 -0.0294
SER 83GLY 84 0.0396
GLY 84ASN 85 -0.0237
ASN 85LYS 86 0.0317
LYS 86VAL 87 0.0382
VAL 87ALA 88 0.0411
ALA 88ILE 89 0.0068
ILE 89SER 90 0.0319
SER 90THR 91 -0.0204
THR 91THR 92 -0.0834
THR 92PRO 93 0.0517
PRO 93LEU 94 0.1438
LEU 94GLU 95 -0.0871
GLU 95ASN 96 0.0619

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.