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***  pdz  ***

CA strain for 23011717530784080

---  normal mode 10  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
GLY 1GLY 2 0.0510
GLY 2SER 3 -0.0347
SER 3MET 4 -0.1708
MET 4ARG 5 0.0315
ARG 5PRO 6 -0.0459
PRO 6PRO 7 0.0739
PRO 7ILE 8 -0.1003
ILE 8ILE 9 0.0391
ILE 9ILE 10 -0.0463
ILE 10HIS 11 0.0258
HIS 11ARG 12 0.0103
ARG 12ALA 13 -0.0245
ALA 13GLY 14 0.0240
GLY 14LYS 15 0.0231
LYS 15LYS 16 -0.0010
LYS 16TYR 17 -0.0057
TYR 17GLY 18 0.0068
GLY 18PHE 19 -0.0195
PHE 19THR 20 -0.0609
THR 20LEU 21 -0.0016
LEU 21ARG 22 -0.0137
ARG 22ALA 23 0.0470
ALA 23ILE 24 -0.0343
ILE 24ARG 25 0.1168
ARG 25VAL 26 -0.0933
VAL 26TYR 27 0.3064
TYR 27MET 28 -0.1730
MET 28GLY 29 0.1457
GLY 29ASP 30 0.1230
ASP 30SER 31 -0.0512
SER 31ASP 32 -0.0122
ASP 32VAL 33 -0.0512
VAL 33TYR 34 -0.0562
TYR 34THR 35 -0.1786
THR 35VAL 36 0.0786
VAL 36HIS 37 -0.1277
HIS 37HIS 38 -0.0401
HIS 38MET 39 -0.0340
MET 39VAL 40 -0.0113
VAL 40TRP 41 0.0077
TRP 41HIS 42 -0.0208
HIS 42VAL 43 -0.0500
VAL 43GLU 44 0.0713
GLU 44ASP 45 -0.0141
ASP 45GLY 46 0.0381
GLY 46GLY 47 -0.0203
GLY 47PRO 48 -0.0315
PRO 48ALA 49 0.0503
ALA 49SER 50 0.0061
SER 50GLU 51 0.0177
GLU 51ALA 52 -0.0210
ALA 52GLY 53 0.0790
GLY 53LEU 54 -0.0479
LEU 54ARG 55 0.2353
ARG 55GLN 56 0.0557
GLN 56GLY 57 0.0232
GLY 57ASP 58 0.0929
ASP 58LEU 59 -0.1152
LEU 59ILE 60 -0.0161
ILE 60THR 61 0.0323
THR 61HIS 62 -0.0226
HIS 62VAL 63 -0.1649
VAL 63ASN 64 -0.0027
ASN 64GLY 65 -0.0535
GLY 65GLU 66 0.0426
GLU 66PRO 67 0.0161
PRO 67VAL 68 0.0157
VAL 68HIS 69 0.0412
HIS 69GLY 70 -0.1596
GLY 70LEU 71 0.0394
LEU 71VAL 72 -0.0317
VAL 72HIS 73 0.0277
HIS 73THR 74 -0.0067
THR 74GLU 75 0.0045
GLU 75VAL 76 0.0047
VAL 76VAL 77 -0.0223
VAL 77GLU 78 0.0301
GLU 78LEU 79 -0.0309
LEU 79ILE 80 -0.0020
ILE 80LEU 81 -0.0102
LEU 81LYS 82 -0.0028
LYS 82SER 83 0.0019
SER 83GLY 84 -0.0372
GLY 84ASN 85 -0.0095
ASN 85LYS 86 -0.0087
LYS 86VAL 87 -0.0210
VAL 87ALA 88 -0.0477
ALA 88ILE 89 0.0103
ILE 89SER 90 -0.0989
SER 90THR 91 -0.0219
THR 91THR 92 0.0753
THR 92PRO 93 -0.2066
PRO 93LEU 94 0.0590
LEU 94GLU 95 0.2489
GLU 95ASN 96 0.0371

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.