CNRS Nantes University UFIP UFIP
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.


***  Robetta03  ***

CA strain for 20122820005765219

---  normal mode 7  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
CYS 1VAL 2 -0.0137
VAL 2PHE 3 0.0087
PHE 3CYS 4 0.0107
CYS 4ARG 5 -0.0157
ARG 5LEU 6 0.0117
LEU 6PRO 7 -0.0071
PRO 7ALA 8 -0.0045
ALA 8HIS 9 0.0133
HIS 9ASP 10 0.0054
ASP 10LEU 11 0.0016
LEU 11SER 12 -0.0009
SER 12GLY 13 -0.0035
GLY 13ARG 14 -0.0032
ARG 14LEU 15 0.0063
LEU 15ALA 16 0.0027
ALA 16ARG 17 -0.0034
ARG 17LEU 18 0.0021
LEU 18CYS 19 -0.0004
CYS 19SER 20 0.0009
SER 20GLN 21 -0.0018
GLN 21MET 22 0.0016
MET 22GLU 23 0.0005
GLU 23ALA 24 -0.0005
ALA 24ARG 25 0.0013
ARG 25GLN 26 0.0035
GLN 26LYS 27 -0.0027
LYS 27GLU 28 0.0021
GLU 28CYS 29 -0.0015
CYS 29GLY 30 0.0088
GLY 30ALA 31 -0.0107
ALA 31SER 32 -0.0099
SER 32PRO 33 0.0097
PRO 33ASP 34 -0.0050
ASP 34PHE 35 0.0012
PHE 35SER 36 -0.0213
SER 36ALA 37 -0.0400
ALA 37PHE 38 0.0023
PHE 38ALA 39 0.0057
ALA 39LEU 40 -0.0019
LEU 40ASP 41 0.0006
ASP 41GLU 42 0.0113
GLU 42VAL 43 -0.0148
VAL 43SER 44 -0.0147
SER 44MET 45 0.0015
MET 45ASN 46 -0.0038
ASN 46LYS 47 -0.0117
LYS 47VAL 48 -0.0031
VAL 48THR 49 0.0047
THR 49GLU 50 -0.0136
GLU 50LYS 51 -0.0020
LYS 51THR 52 -0.0007
THR 52HIS 53 -0.0060
HIS 53ARG 54 -0.0061
ARG 54VAL 55 0.0041
VAL 55LEU 56 -0.0020
LEU 56ARG 57 -0.0058
ARG 57VAL 58 -0.0038
VAL 58MET 59 0.0031
MET 59GLU 60 -0.0035
GLU 60ILE 61 -0.0037
ILE 61LYS 62 0.0002
LYS 62GLU 63 0.0008
GLU 63ALA 64 -0.0033
ALA 64VAL 65 0.0021
VAL 65SER 66 -0.0003
SER 66SER 67 -0.0013
SER 67LEU 68 0.0015
LEU 68PRO 69 0.0006
PRO 69SER 70 -0.0011
SER 70TYR 71 0.0040
TYR 71TRP 72 0.0027
TRP 72SER 73 -0.0002
SER 73TRP 74 0.0074
TRP 74LEU 75 0.0050
LEU 75ARG 76 -0.0020
ARG 76LYS 77 -0.0102
LYS 77THR 78 0.0023
THR 78LYS 79 -0.0214
LYS 79LEU 80 0.0151
LEU 80PRO 81 -0.0014
PRO 81GLU 82 0.0043
GLU 82TYR 83 0.0074
TYR 83THR 84 0.0114
THR 84ARG 85 -0.0003
ARG 85GLU 86 -0.0048
GLU 86ALA 87 0.0021
ALA 87LEU 88 0.0145
LEU 88CYS 89 -0.1042
CYS 89PRO 90 0.0488
PRO 90PRO 91 -0.0387
PRO 91ALA 92 0.0671
ALA 92CYS 93 -0.0274
CYS 93ARG 94 0.0194
ARG 94GLY 95 0.0975
GLY 95SER 96 0.1261
SER 96THR 97 0.0339
THR 97THR 98 0.1362
THR 98LEU 99 -0.0039
LEU 99TYR 100 0.0263
TYR 100ASN 101 -0.0091
ASN 101CYS 102 0.0017
CYS 102SER 103 0.0009
SER 103THR 104 0.0038
THR 104CYS 105 0.0031
CYS 105LYS 106 0.0119
LYS 106GLY 107 0.0409
GLY 107THR 108 -0.0236
THR 108GLU 109 0.0484
GLU 109VAL 110 0.0027
VAL 110SER 111 -0.0650
SER 111CYS 112 0.0131
CYS 112TRP 113 -0.0774
TRP 113PRO 114 -0.0513
PRO 114ARG 115 -0.0167
ARG 115LYS 116 0.0235
LYS 116ARG 117 0.0297
ARG 117CYS 118 -0.0195
CYS 118PHE 119 -0.0685
PHE 119PRO 120 0.0072
PRO 120GLY 121 -0.0149
GLY 121SER 122 -0.0043

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.