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***  vp2-c4  ***

B-factor analysis for ID 2408010529592259715

Overall B-factor prediction

%Bfactors-Wn> Experimental B-factors are nearly constant !

B-factors for all residues

Residue-by-residue B-factor prediction for CA atoms

B-factors are computed based on the first 100 normal modes (B-PREDICT) and are scaled to match the overall B-factors in the submitted model (B-SCALED). A high correlation with the observations is an indicator that the normal modes capture well the overall flexibility features of the model. Comparison of the observed (B-OBS, blue) and the computed (B-SCALED, red) B-factors for all C-alpha atoms is presented below. Differences between B-factors from normal mode analysis and from X-ray crystallographic data may for example indicate regions where the protein flexibility is modified due to external factors such as tight crystall-packing.

  ATOM TYP  RES  RESID   B-PREDICT    B-SCALED      B-OBS
B-SCALEDB-OBS
     5 CA   THR      1      0.0127      0.0000      0.0000
    19 CA   ASN      2      0.0133      0.0000      0.0000
    33 CA   TYR      3      0.0062      0.0000      0.0000
    54 CA   GLU      4      0.0087      0.0000      0.0000
    69 CA   ASP      5      0.0097      0.0000      0.0000
    81 CA   VAL      6      0.0056      0.0000      0.0000
    97 CA   ILE      7      0.0053      0.0000      0.0000
   116 CA   ASP      8      0.0082      0.0000      0.0000
   128 CA   LYS      9      0.0071      0.0000      0.0000
   150 CA   TYR     10      0.0052      0.0000      0.0000
   171 CA   LYS     11      0.0094      0.0000      0.0000
   195 CA   PRO     12      0.0189      0.0000      0.0000
   207 CA   LYS     13      0.0243      0.0000      0.0000
   229 CA   ASP     14      0.0431      0.0000      0.0000
   241 CA   ALA     15      0.1360      0.0000      0.0000
   251 CA   THR     16      0.1603      0.0000      0.0000
   265 CA   PHE     17      0.2423      0.0000      0.0000
   285 CA   ASP     18      0.2055      0.0000      0.0000
   297 CA   HSP     19      0.0971      0.0000      0.0000
   315 CA   ALA     20      0.1043      0.0000      0.0000
   325 CA   SER     21      0.0842      0.0000      0.0000
   336 CA   TYR     22      0.0631      0.0000      0.0000
   357 CA   ASP     23      0.0661      0.0000      0.0000
   369 CA   TRP     24      0.0558      0.0000      0.0000
   393 CA   ARG     25      0.0874      0.0000      0.0000
   417 CA   LEU     26      0.0701      0.0000      0.0000
   436 CA   HSP     27      0.0519      0.0000      0.0000
   454 CA   LYS     28      0.0682      0.0000      0.0000
   476 CA   GLY     29      0.1293      0.0000      0.0000
   483 CA   VAL     30      0.1116      0.0000      0.0000
   499 CA   THR     31      0.0530      0.0000      0.0000
   515 CA   PRO     32      0.0452      0.0000      0.0000
   527 CA   VAL     33      0.0172      0.0000      0.0000
   543 CA   LYS     34      0.0101      0.0000      0.0000
   565 CA   ASP     35      0.0142      0.0000      0.0000
   577 CA   GLN     36      0.0079      0.0000      0.0000
   594 CA   ALA     37      0.0072      0.0000      0.0000
   604 CA   ASN     38      0.0105      0.0000      0.0000
   618 CA   CYS     39      0.0054      0.0000      0.0000
   628 CA   GLY     40      0.0050      0.0000      0.0000
   635 CA   SER     41      0.0029      0.0000      0.0000
   646 CA   CYM     42      0.0025      0.0000      0.0000
   656 CA   TRP     43      0.0022      0.0000      0.0000
   680 CA   ALA     44      0.0018      0.0000      0.0000
   690 CA   PHE     45      0.0017      0.0000      0.0000
   710 CA   SER     46      0.0016      0.0000      0.0000
   721 CA   THR     47      0.0014      0.0000      0.0000
   735 CA   VAL     48      0.0014      0.0000      0.0000
   751 CA   GLY     49      0.0017      0.0000      0.0000
   758 CA   VAL     50      0.0016      0.0000      0.0000
   774 CA   VAL     51      0.0019      0.0000      0.0000
   790 CA   GLU     52      0.0024      0.0000      0.0000
   805 CA   SER     53      0.0029      0.0000      0.0000
   816 CA   GLN     54      0.0027      0.0000      0.0000
   833 CA   TYR     55      0.0038      0.0000      0.0000
   854 CA   ALA     56      0.0054      0.0000      0.0000
   864 CA   ILE     57      0.0059      0.0000      0.0000
   883 CA   ARG     58      0.0053      0.0000      0.0000
   907 CA   LYS     59      0.0077      0.0000      0.0000
   929 CA   ASN     60      0.0099      0.0000      0.0000
   943 CA   GLN     61      0.0089      0.0000      0.0000
   960 CA   LEU     62      0.0150      0.0000      0.0000
   979 CA   VAL     63      0.0067      0.0000      0.0000
   995 CA   SER     64      0.0051      0.0000      0.0000
  1006 CA   ILE     65      0.0029      0.0000      0.0000
  1025 CA   SER     66      0.0028      0.0000      0.0000
  1036 CA   GLU     67      0.0020      0.0000      0.0000
  1052 CA   GLN     68      0.0027      0.0000      0.0000
  1069 CA   GLN     69      0.0027      0.0000      0.0000
  1086 CA   MET     70      0.0019      0.0000      0.0000
  1103 CA   VAL     71      0.0027      0.0000      0.0000
  1119 CA   ASP     72      0.0037      0.0000      0.0000
  1132 CA   CYS     73      0.0040      0.0000      0.0000
  1142 CA   SER     74      0.0037      0.0000      0.0000
  1153 CA   THR     75      0.0080      0.0000      0.0000
  1167 CA   GLN     76      0.0079      0.0000      0.0000
  1184 CA   ASN     77      0.0046      0.0000      0.0000
  1198 CA   THR     78      0.0055      0.0000      0.0000
  1212 CA   GLY     79      0.0063      0.0000      0.0000
  1219 CA   CYS     80      0.0074      0.0000      0.0000
  1229 CA   TYR     81      0.0103      0.0000      0.0000
  1250 CA   GLY     82      0.0073      0.0000      0.0000
  1257 CA   GLY     83      0.0046      0.0000      0.0000
  1264 CA   PHE     84      0.0045      0.0000      0.0000
  1284 CA   ILE     85      0.0021      0.0000      0.0000
  1305 CA   PRO     86      0.0029      0.0000      0.0000
  1317 CA   LEU     87      0.0043      0.0000      0.0000
  1336 CA   ALA     88      0.0024      0.0000      0.0000
  1346 CA   PHE     89      0.0021      0.0000      0.0000
  1366 CA   GLU     90      0.0037      0.0000      0.0000
  1381 CA   ASP     91      0.0036      0.0000      0.0000
  1393 CA   MET     92      0.0026      0.0000      0.0000
  1410 CA   ILE     93      0.0045      0.0000      0.0000
  1429 CA   GLU     94      0.0069      0.0000      0.0000
  1444 CA   MET     95      0.0053      0.0000      0.0000
  1461 CA   GLY     96      0.0051      0.0000      0.0000
  1468 CA   GLY     97      0.0031      0.0000      0.0000
  1475 CA   LEU     98      0.0027      0.0000      0.0000
  1494 CA   CYS     99      0.0041      0.0000      0.0000
  1504 CA   SER    100      0.0051      0.0000      0.0000
  1515 CA   SER    101      0.0060      0.0000      0.0000
  1526 CA   GLU    102      0.0136      0.0000      0.0000
  1541 CA   ASP    103      0.0096      0.0000      0.0000
  1553 CA   TYR    104      0.0068      0.0000      0.0000
  1576 CA   PRO    105      0.0131      0.0000      0.0000
  1588 CA   TYR    106      0.0233      0.0000      0.0000
  1609 CA   VAL    107      0.0189      0.0000      0.0000
  1625 CA   ALA    108      0.0229      0.0000      0.0000
  1635 CA   ASP    109      0.0729      0.0000      0.0000
  1647 CA   ILE    110      0.0535      0.0000      0.0000
  1668 CA   PRO    111      0.0202      0.0000      0.0000
  1680 CA   GLU    112      0.0159      0.0000      0.0000
  1695 CA   MET    113      0.0147      0.0000      0.0000
  1712 CA   CYS    114      0.0097      0.0000      0.0000
  1722 CA   LYS    115      0.0156      0.0000      0.0000
  1744 CA   PHE    116      0.0226      0.0000      0.0000
  1764 CA   ASP    117      0.0277      0.0000      0.0000
  1776 CA   ILE    118      0.0145      0.0000      0.0000
  1795 CA   CYS    119      0.0127      0.0000      0.0000
  1805 CA   GLU    120      0.0270      0.0000      0.0000
  1820 CA   GLN    121      0.0124      0.0000      0.0000
  1837 CA   LYS    122      0.0073      0.0000      0.0000
  1859 CA   TYR    123      0.0036      0.0000      0.0000
  1880 CA   LYS    124      0.0033      0.0000      0.0000
  1902 CA   ILE    125      0.0028      0.0000      0.0000
  1921 CA   ASN    126      0.0041      0.0000      0.0000
  1935 CA   ASN    127      0.0037      0.0000      0.0000
  1949 CA   PHE    128      0.0027      0.0000      0.0000
  1969 CA   LEU    129      0.0031      0.0000      0.0000
  1988 CA   GLU    130      0.0031      0.0000      0.0000
  2003 CA   ILE    131      0.0034      0.0000      0.0000
  2024 CA   PRO    132      0.0049      0.0000      0.0000
  2036 CA   GLU    133      0.0056      0.0000      0.0000
  2051 CA   ASP    134      0.0068      0.0000      0.0000
  2063 CA   LYS    135      0.0049      0.0000      0.0000
  2085 CA   PHE    136      0.0037      0.0000      0.0000
  2105 CA   LYS    137      0.0047      0.0000      0.0000
  2127 CA   GLU    138      0.0053      0.0000      0.0000
  2142 CA   ALA    139      0.0038      0.0000      0.0000
  2152 CA   ILE    140      0.0036      0.0000      0.0000
  2171 CA   ARG    141      0.0059      0.0000      0.0000
  2195 CA   PHE    142      0.0054      0.0000      0.0000
  2215 CA   LEU    143      0.0032      0.0000      0.0000
  2234 CA   GLY    144      0.0034      0.0000      0.0000
  2243 CA   PRO    145      0.0024      0.0000      0.0000
  2255 CA   LEU    146      0.0021      0.0000      0.0000
  2274 CA   SER    147      0.0017      0.0000      0.0000
  2285 CA   VAL    148      0.0020      0.0000      0.0000
  2301 CA   SER    149      0.0027      0.0000      0.0000
  2312 CA   ILE    150      0.0030      0.0000      0.0000
  2331 CA   ALA    151      0.0059      0.0000      0.0000
  2341 CA   VAL    152      0.0089      0.0000      0.0000
  2357 CA   SER    153      0.0086      0.0000      0.0000
  2368 CA   ASP    154      0.0125      0.0000      0.0000
  2380 CA   ASP    155      0.0084      0.0000      0.0000
  2392 CA   PHE    156      0.0053      0.0000      0.0000
  2412 CA   ALA    157      0.0079      0.0000      0.0000
  2422 CA   PHE    158      0.0117      0.0000      0.0000
  2442 CA   TYR    159      0.0076      0.0000      0.0000
  2463 CA   ARG    160      0.0098      0.0000      0.0000
  2487 CA   GLY    161      0.0094      0.0000      0.0000
  2494 CA   GLY    162      0.0103      0.0000      0.0000
  2501 CA   ILE    163      0.0078      0.0000      0.0000
  2520 CA   PHE    164      0.0062      0.0000      0.0000
  2540 CA   ASP    165      0.0148      0.0000      0.0000
  2552 CA   GLY    166      0.0102      0.0000      0.0000
  2559 CA   GLU    167      0.0144      0.0000      0.0000
  2574 CA   CYS    168      0.0096      0.0000      0.0000
  2584 CA   GLY    169      0.0183      0.0000      0.0000
  2591 CA   GLU    170      0.0238      0.0000      0.0000
  2606 CA   ALA    171      0.0132      0.0000      0.0000
  2618 CA   PRO    172      0.0071      0.0000      0.0000
  2630 CA   ASN    173      0.0047      0.0000      0.0000
  2644 CA   HSP    174      0.0033      0.0000      0.0000
  2662 CA   ALA    175      0.0020      0.0000      0.0000
  2672 CA   VAL    176      0.0020      0.0000      0.0000
  2688 CA   ILE    177      0.0019      0.0000      0.0000
  2707 CA   LEU    178      0.0023      0.0000      0.0000
  2726 CA   VAL    179      0.0032      0.0000      0.0000
  2742 CA   GLY    180      0.0041      0.0000      0.0000
  2749 CA   PHE    181      0.0056      0.0000      0.0000
  2769 CA   GLY    182      0.0066      0.0000      0.0000
  2776 CA   ALA    183      0.0119      0.0000      0.0000
  2786 CA   GLU    184      0.0149      0.0000      0.0000
  2801 CA   ASP    185      0.0269      0.0000      0.0000
  2813 CA   ALA    186      0.0265      0.0000      0.0000
  2823 CA   TYR    187      0.0639      0.0000      0.0000
  2844 CA   ASP    188      0.0766      0.0000      0.0000
  2856 CA   PHE    189      0.1507      0.0000      0.0000
  2876 CA   ASP    190      0.1860      0.0000      0.0000
  2888 CA   THR    191      0.1589      0.0000      0.0000
  2902 CA   LYS    192      0.1563      0.0000      0.0000
  2924 CA   THR    193      0.1040      0.0000      0.0000
  2938 CA   MET    194      0.0567      0.0000      0.0000
  2955 CA   LYS    195      0.0315      0.0000      0.0000
  2977 CA   LYS    196      0.0199      0.0000      0.0000
  2999 CA   ARG    197      0.0086      0.0000      0.0000
  3023 CA   TYR    198      0.0073      0.0000      0.0000
  3044 CA   TYR    199      0.0049      0.0000      0.0000
  3065 CA   TYR    200      0.0042      0.0000      0.0000
  3086 CA   ILE    201      0.0039      0.0000      0.0000
  3105 CA   VAL    202      0.0032      0.0000      0.0000
  3121 CA   LYS    203      0.0032      0.0000      0.0000
  3143 CA   ASN    204      0.0030      0.0000      0.0000
  3157 CA   SER    205      0.0036      0.0000      0.0000
  3168 CA   TRP    206      0.0039      0.0000      0.0000
  3192 CA   GLY    207      0.0076      0.0000      0.0000
  3199 CA   VAL    208      0.0130      0.0000      0.0000
  3215 CA   SER    209      0.0113      0.0000      0.0000
  3226 CA   TRP    210      0.0073      0.0000      0.0000
  3250 CA   GLY    211      0.0070      0.0000      0.0000
  3257 CA   GLU    212      0.0088      0.0000      0.0000
  3272 CA   LYS    213      0.0116      0.0000      0.0000
  3294 CA   GLY    214      0.0055      0.0000      0.0000
  3301 CA   PHE    215      0.0047      0.0000      0.0000
  3321 CA   ILE    216      0.0046      0.0000      0.0000
  3340 CA   ARG    217      0.0050      0.0000      0.0000
  3364 CA   LEU    218      0.0042      0.0000      0.0000
  3383 CA   GLU    219      0.0054      0.0000      0.0000
  3398 CA   THR    220      0.0057      0.0000      0.0000
  3412 CA   ASP    221      0.0097      0.0000      0.0000
  3424 CA   ILE    222      0.0108      0.0000      0.0000
  3443 CA   ASN    223      0.0231      0.0000      0.0000
  3457 CA   GLY    224      0.0266      0.0000      0.0000
  3464 CA   TYR    225      0.0245      0.0000      0.0000
  3485 CA   ARG    226      0.0276      0.0000      0.0000
  3509 CA   LYS    227      0.0089      0.0000      0.0000
  3533 CA   PRO    228      0.0092      0.0000      0.0000
  3545 CA   CYS    229      0.0058      0.0000      0.0000
  3555 CA   SER    230      0.0059      0.0000      0.0000
  3566 CA   LEU    231      0.0034      0.0000      0.0000
  3585 CA   GLY    232      0.0036      0.0000      0.0000
  3592 CA   THR    233      0.0078      0.0000      0.0000
  3606 CA   GLU    234      0.0039      0.0000      0.0000
  3621 CA   ALA    235      0.0025      0.0000      0.0000
  3631 CA   LEU    236      0.0021      0.0000      0.0000
  3650 CA   VAL    237      0.0020      0.0000      0.0000
  3666 CA   ALA    238      0.0019      0.0000      0.0000
  3676 CA   LEU    239      0.0027      0.0000      0.0000
  3695 CA   VAL    240      0.0031      0.0000      0.0000
  3711 CA   ASP    241      0.0049      0.0000      0.0000

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.