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* Sonic *

B-factor analysis for ID 2405231940243058704

Overall B-factor prediction

Correlation= 0.359 for 157 C-alpha atoms.

B-factors for all residues

Residue-by-residue B-factor prediction for CA atoms

B-factors are computed based on the first 100 normal modes (B-PREDICT) and are scaled to match the overall B-factors in the submitted model (B-SCALED). A high correlation with the observations is an indicator that the normal modes capture well the overall flexibility features of the model. Comparison of the observed (B-OBS, blue) and the computed (B-SCALED, red) B-factors for all C-alpha atoms is presented below. Differences between B-factors from normal mode analysis and from X-ray crystallographic data may for example indicate regions where the protein flexibility is modified due to external factors such as tight crystall-packing.

ATOM TYP RES RESID B-PREDICT B-SCALED B-OBS	B-SCALED	B-OBS
2 CA LYS 39 0.2087 41.3852 43.3200
14 CA LEU 40 0.0364 14.1033 36.1900
23 CA THR 41 0.0395 14.5956 24.4800
32 CA PRO 42 0.0135 10.4827 17.0700
39 CA LEU 43 0.0087 9.7191 11.1700
48 CA ALA 44 0.0187 11.3027 11.9100
54 CA TYR 45 0.0192 11.3760 11.6800
68 CA LYS 46 0.0162 10.9030 12.1800
81 CA GLN 47 0.0123 10.2776 9.2200
93 CA PHE 48 0.0108 10.0511 10.0000
105 CA ILE 49 0.0097 9.8805 7.9600
114 CA PRO 50 0.0150 10.7180 8.3500
121 CA ASN 51 0.0319 13.3847 13.0700
132 CA VAL 52 0.0250 12.2991 10.7700
140 CA ALA 53 0.0208 11.6266 8.2000
146 CA GLU 54 0.0077 9.5500 4.9800
156 CA LYS 55 0.0093 9.8092 7.4900
169 CA THR 56 0.0166 10.9723 10.1100
178 CA LEU 57 0.0222 11.8594 11.5100
187 CA GLY 58 0.0208 11.6302 7.5700
192 CA ALA 59 0.0094 9.8187 7.2400
198 CA SER 60 0.0060 9.2819 6.1400
206 CA GLY 61 0.0083 9.6484 5.2500
211 CA ARG 62 0.0123 10.2918 10.7200
228 CA TYR 63 0.0092 9.7984 11.4400
242 CA GLU 64 0.0103 9.9741 19.4300
252 CA GLY 65 0.0112 10.1185 16.3300
257 CA LYS 66 0.0088 9.7369 11.0000
270 CA ILE 67 0.0077 9.5557 7.9700
279 CA THR 68 0.0137 10.4990 13.1700
288 CA ARG 69 0.0176 11.1271 18.2900
305 CA ASN 70 0.0648 18.5911 30.6500
316 CA SER 71 0.0262 12.4796 30.7700
324 CA GLU 72 0.0468 15.7417 38.6100
334 CA ARG 73 0.0164 10.9396 24.9000
351 CA PHE 74 0.0144 10.6230 18.7100
363 CA LYS 75 0.0436 15.2349 24.6800
376 CA GLU 76 0.0164 10.9366 21.9500
386 CA LEU 77 0.0090 9.7643 12.0100
395 CA THR 78 0.0109 10.0693 17.4300
404 CA PRO 79 0.0117 10.1959 13.4300
411 CA ASN 80 0.0088 9.7282 11.5600
422 CA TYR 81 0.0168 10.9921 12.7200
436 CA ASN 82 0.0116 10.1728 11.9000
447 CA PRO 83 0.0353 13.9234 15.3200
454 CA ASP 84 0.0133 10.4423 10.5800
463 CA ILE 85 0.0080 9.5994 10.4700
472 CA ILE 86 0.0079 9.5851 7.2400
481 CA PHE 87 0.0073 9.4971 4.6800
493 CA LYS 88 0.0118 10.2072 6.5000
506 CA ASP 89 0.0127 10.3470 12.5200
515 CA GLU 90 0.0284 12.8414 15.8200
525 CA GLU 91 0.0240 12.1451 18.3700
535 CA ASN 92 0.0412 14.8660 15.7400
546 CA THR 93 0.0241 12.1460 14.4300
555 CA GLY 94 0.0130 10.3912 10.3100
560 CA ALA 95 0.0077 9.5501 8.8700
566 CA ASP 96 0.0055 9.2060 10.4300
575 CA ARG 97 0.0077 9.5615 7.1000
592 CA LEU 98 0.0064 9.3562 4.5700
601 CA MET 99 0.0059 9.2741 3.6700
610 CA THR 100 0.0065 9.3642 8.2300
619 CA GLN 101 0.0125 10.3163 9.7700
631 CA ARG 102 0.0083 9.6506 6.4600
648 CA CYS 103 0.0059 9.2756 6.4000
655 CA LYS 104 0.0082 9.6362 9.5600
668 CA ASP 105 0.0097 9.8783 8.6700
677 CA LYS 106 0.0075 9.5314 7.8900
690 CA LEU 107 0.0064 9.3449 3.6900
699 CA ASN 108 0.0088 9.7331 6.1800
710 CA ALA 109 0.0096 9.8559 5.5600
716 CA LEU 110 0.0065 9.3694 6.6200
725 CA ALA 111 0.0080 9.6007 9.0300
731 CA ILE 112 0.0166 10.9621 10.6000
740 CA SER 113 0.0122 10.2651 9.2500
748 CA VAL 114 0.0086 9.6961 8.2700
756 CA MET 115 0.0134 10.4549 13.6400
765 CA ASN 116 0.0280 12.7665 14.3600
776 CA GLN 117 0.0172 11.0612 12.4000
788 CA TRP 118 0.0150 10.7055 10.2200
804 CA PRO 119 0.0570 17.3596 9.2100
811 CA GLY 120 0.0795 20.9332 15.8200
816 CA VAL 121 0.0139 10.5366 11.5000
824 CA LYS 122 0.0090 9.7593 10.6200
837 CA LEU 123 0.0049 9.1093 2.1300
846 CA ARG 124 0.0059 9.2660 5.9800
863 CA VAL 125 0.0047 9.0885 4.3800
871 CA THR 126 0.0055 9.2147 4.9000
880 CA GLU 127 0.0050 9.1227 4.1300
890 CA GLY 128 0.0042 9.0090 4.8500
895 CA TRP 129 0.0043 9.0136 6.8300
911 CA ASP 130 0.0065 9.3680 7.2700
920 CA GLU 131 0.0102 9.9481 12.3100
930 CA ASP 132 0.0270 12.6064 19.3200
939 CA GLY 133 0.0244 12.1981 19.1000
944 CA HIS 134 0.0261 12.4629 19.0400
957 CA HIS 135 0.0146 10.6514 14.8200
970 CA SER 136 0.0396 14.6122 18.9700
978 CA GLU 137 0.0463 15.6613 19.3400
988 CA GLU 138 0.0147 10.6718 12.1700
998 CA SER 139 0.0077 9.5507 8.3500
1006 CA LEU 140 0.0043 9.0114 7.8900
1015 CA HIS 141 0.0041 8.9794 4.5200
1028 CA TYR 142 0.0054 9.1847 5.3300
1042 CA GLU 143 0.0043 9.0242 10.7800
1052 CA GLY 144 0.0037 8.9250 5.2100
1057 CA ARG 145 0.0039 8.9513 3.6800
1074 CA ALA 146 0.0036 8.9021 3.3800
1080 CA VAL 147 0.0032 8.8363 4.6200
1088 CA ASP 148 0.0041 8.9906 5.7600
1097 CA ILE 149 0.0035 8.8966 8.8900
1106 CA THR 150 0.0047 9.0800 6.9200
1115 CA THR 151 0.0063 9.3274 7.7900
1124 CA SER 152 0.0095 9.8340 6.6100
1132 CA ASP 153 0.0151 10.7271 11.2100
1141 CA ARG 154 0.0118 10.1994 9.6500
1158 CA ASP 155 0.0141 10.5755 8.9400
1167 CA ARG 156 0.0122 10.2743 10.7200
1184 CA SER 157 0.0241 12.1487 11.6700
1192 CA LYS 158 0.0106 10.0136 10.4600
1205 CA TYR 159 0.0062 9.3191 8.4000
1219 CA GLY 160 0.0085 9.6884 5.0100
1224 CA MET 161 0.0083 9.6552 10.3000
1233 CA LEU 162 0.0050 9.1278 9.1500
1242 CA ALA 163 0.0051 9.1508 7.1600
1248 CA ARG 164 0.0084 9.6715 11.4400
1265 CA LEU 165 0.0071 9.4643 8.5900
1274 CA ALA 166 0.0060 9.2856 4.9800
1280 CA VAL 167 0.0084 9.6657 5.8100
1288 CA GLU 168 0.0177 11.1400 7.0100
1298 CA ALA 169 0.0084 9.6715 9.5200
1304 CA GLY 170 0.0085 9.6827 5.0100
1309 CA PHE 171 0.0053 9.1717 6.4200
1321 CA ASP 172 0.0066 9.3780 9.5400
1330 CA TRP 173 0.0056 9.2202 2.6500
1346 CA VAL 174 0.0047 9.0737 5.2700
1354 CA TYR 175 0.0060 9.2888 7.9700
1368 CA TYR 176 0.0065 9.3636 7.7700
1382 CA GLU 177 0.0084 9.6640 8.9900
1392 CA SER 178 0.0128 10.3609 12.6500
1400 CA LYS 179 0.0150 10.7092 10.2800
1413 CA ALA 180 0.0115 10.1511 9.1100
1419 CA HIS 181 0.0059 9.2782 5.8500
1432 CA ILE 182 0.0038 8.9438 3.9200
1441 CA HIS 183 0.0041 8.9869 5.0600
1454 CA CYS 184 0.0034 8.8759 6.5400
1461 CA SER 185 0.0043 9.0172 3.4200
1469 CA VAL 186 0.0044 9.0345 4.2400
1477 CA LYS 187 0.0064 9.3484 8.5300
1490 CA ALA 188 0.0091 9.7782 12.8800
1496 CA GLU 189 0.0190 11.3494 28.7100
1506 CA ASN 190 0.0339 13.7001 33.3100
1517 CA SER 191 0.0172 11.0629 28.6200
1525 CA VAL 192 0.0312 13.2788 32.5700
1533 CA ALA 193 0.1112 25.9498 26.1700
1539 CA ALA 194 0.1374 30.0975 18.4700
1545 CA LYS 195 0.5201 90.6963 15.6400

If you find results from this site helpful for your research, please cite one of our papers:

K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.

Should you encounter any unexpected behaviour, please let us know.