Should you encounter any unexpected behaviour,
please let us know.

* bacteriorhodopsin *

B-factor analysis for ID 2404222055381936730

Overall B-factor prediction

Correlation= 0.239 for 231 C-alpha atoms.

B-factors for all residues

Residue-by-residue B-factor prediction for CA atoms

B-factors are computed based on the first 100 normal modes (B-PREDICT) and are scaled to match the overall B-factors in the submitted model (B-SCALED). A high correlation with the observations is an indicator that the normal modes capture well the overall flexibility features of the model. Comparison of the observed (B-OBS, blue) and the computed (B-SCALED, red) B-factors for all C-alpha atoms is presented below. Differences between B-factors from normal mode analysis and from X-ray crystallographic data may for example indicate regions where the protein flexibility is modified due to external factors such as tight crystall-packing.

ATOM TYP RES RESID B-PREDICT B-SCALED B-OBS	B-SCALED	B-OBS
2 CA ILE 4 0.0109 47.9132 95.5500
20 CA THR 5 0.0140 49.3010 81.9500
34 CA GLY 6 0.0141 49.3379 76.8800
41 CA ARG 7 0.0082 46.6672 60.2000
65 CA PRO 8 0.0079 46.5434 54.2600
79 CA GLU 9 0.0039 44.7455 42.8200
94 CA TRP 10 0.0042 44.9139 41.1400
118 CA ILE 11 0.0055 45.4853 42.4700
137 CA TRP 12 0.0029 44.3207 37.5000
161 CA LEU 13 0.0024 44.0722 38.9400
180 CA ALA 14 0.0039 44.7593 39.9900
190 CA LEU 15 0.0041 44.8593 38.0100
209 CA GLY 16 0.0028 44.2740 37.4100
216 CA THR 17 0.0029 44.3010 37.0000
230 CA ALA 18 0.0047 45.1227 43.3700
240 CA LEU 19 0.0043 44.9432 37.6000
259 CA MET 20 0.0028 44.2489 36.5500
276 CA GLY 21 0.0039 44.7506 41.9900
283 CA LEU 22 0.0073 46.2748 41.1300
302 CA GLY 23 0.0049 45.2094 38.3400
309 CA THR 24 0.0039 44.7591 38.1900
323 CA LEU 25 0.0065 45.9413 43.5000
342 CA TYR 26 0.0053 45.3775 42.9500
363 CA PHE 27 0.0035 44.5993 36.1600
383 CA LEU 28 0.0074 46.3214 51.1500
402 CA VAL 29 0.0107 47.7983 51.5400
418 CA LYS 30 0.0064 45.8807 48.0700
440 CA GLY 31 0.0064 45.8817 54.5500
447 CA MET 32 0.0222 52.9362 79.3700
464 CA GLY 33 0.0315 57.1244 83.9400
471 CA VAL 34 0.0129 48.7661 62.4100
487 CA SER 35 0.0205 52.1943 67.1700
498 CA ASP 36 0.0128 48.7625 59.1900
510 CA PRO 37 0.0148 49.6511 69.7000
524 CA ASP 38 0.0075 46.3935 54.8300
536 CA ALA 39 0.0049 45.2006 54.8000
546 CA LYS 40 0.0066 45.9514 47.0400
568 CA LYS 41 0.0062 45.7811 48.1700
590 CA PHE 42 0.0022 44.0126 40.1900
610 CA TYR 43 0.0028 44.2528 37.9300
631 CA ALA 44 0.0032 44.4625 38.6500
641 CA ILE 45 0.0024 44.0969 43.8100
660 CA THR 46 0.0020 43.9193 35.1300
674 CA THR 47 0.0025 44.1341 35.5600
688 CA LEU 48 0.0028 44.2861 36.3200
707 CA VAL 49 0.0021 43.9640 30.1600
723 CA PRO 50 0.0024 44.1019 33.2800
737 CA ALA 51 0.0030 44.3381 35.4800
747 CA ILE 52 0.0027 44.2047 31.8700
766 CA ALA 53 0.0024 44.0867 37.1000
776 CA PHE 54 0.0029 44.2924 34.9500
796 CA THR 55 0.0038 44.7043 33.6700
810 CA MET 56 0.0022 44.0047 29.9200
827 CA TYR 57 0.0019 43.8480 34.0200
848 CA LEU 58 0.0035 44.5703 34.8300
867 CA SER 59 0.0036 44.6457 33.3100
878 CA MET 60 0.0024 44.0845 33.3100
895 CA LEU 61 0.0029 44.3362 36.1900
914 CA LEU 62 0.0061 45.7567 35.7400
933 CA GLY 63 0.0058 45.6312 43.2100
940 CA TYR 64 0.0086 46.8436 42.4500
961 CA GLY 65 0.0040 44.7904 43.0400
968 CA LEU 66 0.0037 44.6624 38.7000
987 CA THR 67 0.0042 44.8989 45.5600
1001 CA MET 68 0.0067 46.0179 48.8400
1018 CA VAL 69 0.0054 45.4224 56.4400
1034 CA PRO 70 0.0092 47.1189 56.6100
1048 CA PHE 71 0.0082 46.6966 55.5100
1068 CA GLY 72 0.0300 56.4317 69.5700
1075 CA GLY 73 0.0463 63.7458 71.7800
1082 CA GLU 74 0.0237 53.6102 72.1500
1097 CA GLN 75 0.0147 49.6008 62.6700
1114 CA ASN 76 0.0050 45.2477 49.7100
1128 CA PRO 77 0.0043 44.9281 54.3400
1142 CA ILE 78 0.0018 43.8401 42.1800
1161 CA TYR 79 0.0019 43.8478 39.2700
1182 CA TRP 80 0.0027 44.2204 34.8700
1206 CA ALA 81 0.0025 44.1228 36.9800
1216 CA ARG 82 0.0014 43.6587 37.4000
1240 CA TYR 83 0.0018 43.8426 37.6500
1261 CA ALA 84 0.0026 44.1999 38.2400
1271 CA ASP 85 0.0023 44.0336 33.9800
1283 CA TRP 86 0.0020 43.9127 31.6400
1307 CA LEU 87 0.0028 44.2549 31.9000
1326 CA PHE 88 0.0040 44.8202 40.3500
1346 CA THR 89 0.0025 44.1181 31.9900
1360 CA THR 90 0.0022 44.0074 35.8600
1374 CA PRO 91 0.0025 44.1128 35.5400
1388 CA LEU 92 0.0020 43.9220 34.7600
1407 CA LEU 93 0.0018 43.8164 32.2600
1426 CA LEU 94 0.0016 43.7277 35.1700
1445 CA LEU 95 0.0017 43.7925 36.8900
1464 CA ASP 96 0.0014 43.6325 37.7400
1476 CA LEU 97 0.0013 43.5984 43.8000
1495 CA ALA 98 0.0021 43.9631 40.6300
1505 CA LEU 99 0.0023 44.0298 47.5600
1524 CA LEU 100 0.0020 43.9236 51.2000
1543 CA VAL 101 0.0025 44.1342 45.4900
1559 CA ASP 102 0.0054 45.4114 59.5800
1571 CA ALA 103 0.0048 45.1684 47.2500
1581 CA ASP 104 0.0167 50.4878 58.4500
1593 CA GLN 105 0.0189 51.4535 54.2700
1610 CA GLY 106 0.0143 49.4349 50.8700
1617 CA THR 107 0.0070 46.1553 42.5600
1631 CA ILE 108 0.0048 45.1858 52.5100
1650 CA LEU 109 0.0094 47.2081 44.1100
1669 CA ALA 110 0.0058 45.5922 42.3900
1679 CA LEU 111 0.0034 44.5541 44.5900
1698 CA VAL 112 0.0040 44.8144 41.1300
1714 CA GLY 113 0.0055 45.4867 40.7000
1721 CA ALA 114 0.0036 44.6403 38.3800
1731 CA ASP 115 0.0029 44.2994 36.0300
1743 CA GLY 116 0.0047 45.1284 38.2200
1750 CA ILE 117 0.0049 45.1896 36.7900
1769 CA MET 118 0.0028 44.2870 33.0400
1786 CA ILE 119 0.0027 44.2200 34.3100
1805 CA GLY 120 0.0040 44.8266 38.3400
1812 CA THR 121 0.0038 44.7036 35.0500
1826 CA GLY 122 0.0027 44.2317 36.1200
1833 CA LEU 123 0.0025 44.1433 36.1700
1852 CA VAL 124 0.0041 44.8376 33.1700
1868 CA GLY 125 0.0028 44.2904 39.4200
1875 CA ALA 126 0.0022 44.0152 41.7700
1885 CA LEU 127 0.0030 44.3640 36.8200
1904 CA THR 128 0.0054 45.4323 40.0800
1918 CA LYS 129 0.0075 46.3575 54.5500
1940 CA VAL 130 0.0101 47.5125 42.0900
1956 CA TYR 131 0.0073 46.2639 43.5700
1977 CA SER 132 0.0115 48.1723 45.6900
1988 CA TYR 133 0.0082 46.6776 38.0800
2009 CA ARG 134 0.0035 44.5715 38.7300
2033 CA PHE 135 0.0045 45.0264 36.1400
2053 CA VAL 136 0.0065 45.9295 34.6900
2069 CA TRP 137 0.0044 44.9912 35.4200
2093 CA TRP 138 0.0034 44.5208 35.4400
2117 CA ALA 139 0.0045 45.0227 39.2200
2127 CA ILE 140 0.0054 45.4117 32.0300
2146 CA SER 141 0.0039 44.7494 36.7700
2157 CA THR 142 0.0045 45.0142 36.5700
2171 CA ALA 143 0.0054 45.4401 34.1500
2181 CA ALA 144 0.0034 44.5169 33.1800
2191 CA MET 145 0.0030 44.3760 38.0400
2208 CA LEU 146 0.0051 45.2804 37.9900
2227 CA TYR 147 0.0042 44.9103 41.3200
2248 CA ILE 148 0.0025 44.1473 37.2600
2267 CA LEU 149 0.0028 44.2900 46.9400
2286 CA TYR 150 0.0057 45.5609 44.3600
2307 CA VAL 151 0.0039 44.7602 41.7100
2323 CA LEU 152 0.0024 44.1012 51.8600
2342 CA PHE 153 0.0036 44.6282 64.2800
2362 CA PHE 154 0.0088 46.9576 69.2100
2382 CA GLY 155 0.0070 46.1309 86.5000
2389 CA PHE 156 0.0030 44.3503 92.9300
2409 CA THR 157 0.0039 44.7740 105.1500
2423 CA SER 158 0.0097 47.3623 114.0500
2434 CA LYS 159 0.0065 45.9213 96.1500
2456 CA ALA 160 0.0048 45.1524 87.7500
2466 CA GLU 161 0.0111 47.9832 104.5300
2481 CA SER 162 0.0133 48.9833 100.1500
2492 CA MET 163 0.0086 46.8730 80.1300
2509 CA ARG 164 0.0108 47.8680 62.9000
2533 CA PRO 165 0.0138 49.2038 65.1700
2547 CA GLU 166 0.0070 46.1515 66.8900
2562 CA VAL 167 0.0042 44.8994 59.1200
2578 CA ALA 168 0.0050 45.2397 53.7200
2588 CA SER 169 0.0061 45.7454 58.8500
2599 CA THR 170 0.0030 44.3714 57.7300
2613 CA PHE 171 0.0022 43.9877 48.5400
2633 CA LYS 172 0.0042 44.8781 46.0900
2655 CA VAL 173 0.0043 44.9608 45.4800
2671 CA LEU 174 0.0022 44.0091 45.2800
2690 CA ARG 175 0.0024 44.0881 45.1200
2714 CA ASN 176 0.0037 44.6870 50.1900
2728 CA VAL 177 0.0034 44.5439 42.8500
2744 CA THR 178 0.0024 44.0757 41.2400
2758 CA VAL 179 0.0028 44.2760 42.2200
2774 CA VAL 180 0.0046 45.0842 39.5000
2790 CA LEU 181 0.0034 44.5279 37.6400
2809 CA TRP 182 0.0024 44.0732 38.6200
2833 CA SER 183 0.0030 44.3787 37.5200
2844 CA ALA 184 0.0030 44.3697 38.5500
2854 CA TYR 185 0.0026 44.1824 35.0200
2875 CA PRO 186 0.0035 44.5913 34.3200
2889 CA VAL 187 0.0042 44.8859 39.9100
2905 CA VAL 188 0.0024 44.0815 36.0700
2921 CA TRP 189 0.0018 43.8126 33.5500
2945 CA LEU 190 0.0036 44.6213 37.1800
2964 CA ILE 191 0.0041 44.8710 40.9800
2983 CA GLY 192 0.0029 44.3021 39.4000
2990 CA SER 193 0.0029 44.3290 47.7300
3001 CA GLU 194 0.0021 43.9387 53.2900
3016 CA GLY 195 0.0030 44.3781 45.0300
3023 CA ALA 196 0.0073 46.2688 54.1900
3033 CA GLY 197 0.0079 46.5698 55.1800
3040 CA ILE 198 0.0111 47.9906 45.4900
3059 CA VAL 199 0.0067 46.0116 42.3500
3075 CA PRO 200 0.0060 45.6804 48.8800
3089 CA LEU 201 0.0034 44.5351 39.9200
3108 CA ASN 202 0.0042 44.9051 40.0300
3122 CA ILE 203 0.0046 45.0896 37.9700
3141 CA GLU 204 0.0024 44.0983 41.5000
3156 CA THR 205 0.0020 43.9057 36.7700
3170 CA LEU 206 0.0029 44.3324 37.0600
3189 CA LEU 207 0.0031 44.4119 34.3900
3208 CA PHE 208 0.0018 43.8162 37.0300
3228 CA MET 209 0.0021 43.9396 41.1200
3245 CA VAL 210 0.0030 44.3393 37.0200
3261 CA LEU 211 0.0027 44.2433 34.8200
3280 CA ASP 212 0.0021 43.9569 32.6600
3292 CA VAL 213 0.0024 44.0878 38.1500
3308 CA SER 214 0.0027 44.2114 38.8400
3319 CA ALA 215 0.0024 44.0706 38.5800
3329 CA LYS 216 0.0019 43.8729 39.1100
3349 CA VAL 217 0.0021 43.9782 36.1400
3365 CA GLY 218 0.0025 44.1297 46.2800
3372 CA PHE 219 0.0019 43.8524 39.0100
3392 CA GLY 220 0.0021 43.9519 37.2500
3399 CA LEU 221 0.0030 44.3725 39.9200
3418 CA ILE 222 0.0028 44.2834 48.0900
3437 CA LEU 223 0.0019 43.8839 42.8800
3456 CA LEU 224 0.0027 44.2174 46.4800
3475 CA ARG 225 0.0059 45.6445 56.2300
3499 CA SER 226 0.0054 45.4102 54.6500
3510 CA ARG 227 0.0067 45.9984 52.8000
3534 CA ALA 228 0.0034 44.5403 47.3300
3544 CA ILE 229 0.0030 44.3418 53.3300
3563 CA PHE 230 0.0072 46.2585 56.5600
3583 CA GLY 231 0.0124 48.5491 70.9300
3590 CA GLU 232 0.0389 60.4312 70.9500
3605 CA ALA 233 0.1020 88.6393 72.3100
3615 CA GLU 234 0.5064 269.5591 76.8900

If you find results from this site helpful for your research, please cite one of our papers:

K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.

Should you encounter any unexpected behaviour, please let us know.