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Normal Mode Analysis for ID TRXR

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 3 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0057
mode 8 1.45 0.0065
mode 9 2.43 0.5578
mode 10 2.65 0.0037
mode 11 2.89 0.5086
mode 12 3.00 0.4094
mode 13 3.77 0.5045
mode 14 3.88 0.4995
mode 15 4.23 0.5522
mode 16 5.14 0.5654
mode 17 5.31 0.4145
mode 18 5.50 0.4800
mode 19 5.64 0.4258
mode 20 5.95 0.5159
mode 21 6.08 0.4504
mode 22 6.50 0.6569
mode 23 6.60 0.6995
mode 24 7.40 0.3551
mode 25 7.55 0.1177
mode 26 7.93 0.6593
mode 27 8.05 0.6659
mode 28 8.06 0.5211
mode 29 8.21 0.4368
mode 30 8.40 0.2837
mode 31 8.51 0.1063
mode 32 8.76 0.3126
mode 33 8.83 0.3203
mode 34 8.89 0.3655
mode 35 9.05 0.4675
mode 36 9.39 0.4546
mode 37 9.56 0.3667
mode 38 9.80 0.4586
mode 39 9.84 0.5295
mode 40 10.11 0.3311
mode 41 10.32 0.3566
mode 42 10.59 0.5095
mode 43 10.62 0.4224
mode 44 10.79 0.3602
mode 45 10.83 0.3481
mode 46 10.99 0.5498
mode 47 11.11 0.3610
mode 48 11.23 0.2213
mode 49 11.31 0.2204
mode 50 11.42 0.3547
mode 51 11.45 0.4016
mode 52 11.60 0.4309
mode 53 11.75 0.4415
mode 54 11.78 0.5082
mode 55 11.84 0.4893
mode 56 12.01 0.3808
mode 57 12.22 0.4864
mode 58 12.36 0.6056
mode 59 12.54 0.3255
mode 60 12.65 0.4707
mode 61 12.73 0.6045
mode 62 12.74 0.4811
mode 63 12.88 0.5012
mode 64 13.11 0.5003
mode 65 13.20 0.5912
mode 66 13.28 0.4555
mode 67 13.32 0.5393
mode 68 13.38 0.5313
mode 69 13.49 0.5417
mode 70 13.67 0.4667
mode 71 13.75 0.5040
mode 72 13.84 0.6115
mode 73 13.91 0.5072
mode 74 14.00 0.5210
mode 75 14.05 0.4548
mode 76 14.15 0.6226
mode 77 14.22 0.5939
mode 78 14.31 0.4111
mode 79 14.35 0.3834
mode 80 14.44 0.5235
mode 81 14.65 0.3952
mode 82 14.69 0.4475
mode 83 14.80 0.6043
mode 84 14.89 0.4487
mode 85 14.94 0.4310
mode 86 15.01 0.5300
mode 87 15.12 0.1149
mode 88 15.19 0.4671
mode 89 15.29 0.5211
mode 90 15.31 0.3626
mode 91 15.44 0.4129
mode 92 15.49 0.3721
mode 93 15.57 0.4487
mode 94 15.71 0.5167
mode 95 15.72 0.4847
mode 96 15.80 0.3671
mode 97 15.82 0.3780
mode 98 15.93 0.5025
mode 99 16.09 0.2995
mode 100 16.14 0.3917
mode 101 16.22 0.4572
mode 102 16.34 0.4340
mode 103 16.43 0.4057
mode 104 16.47 0.4238
mode 105 16.54 0.3974
mode 106 16.62 0.4285

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.