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Normal Mode Analysis for ID EXAMPLE5

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.6363
mode 8 1.01 0.6361
mode 9 1.39 0.5609
mode 10 1.55 0.5989
mode 11 1.55 0.5952
mode 12 1.80 0.6407
mode 13 1.81 0.6530
mode 14 1.84 0.5665
mode 15 1.97 0.3420
mode 16 2.00 0.4337
mode 17 2.16 0.4017
mode 18 2.18 0.5488
mode 19 2.20 0.4661
mode 20 2.45 0.6052
mode 21 2.45 0.6026
mode 22 2.56 0.6432
mode 23 2.57 0.6975
mode 24 2.60 0.0893
mode 25 2.78 0.7282
mode 26 2.78 0.7435
mode 27 2.90 0.6304
mode 28 3.01 0.8289
mode 29 3.18 0.4041
mode 30 3.20 0.5192
mode 31 3.26 0.5490
mode 32 3.29 0.5700
mode 33 3.29 0.5387
mode 34 3.33 0.5111
mode 35 3.36 0.4298
mode 36 3.36 0.4237
mode 37 3.48 0.6045
mode 38 3.49 0.5191
mode 39 3.51 0.4794
mode 40 3.63 0.2358
mode 41 3.72 0.4149
mode 42 3.73 0.5779
mode 43 3.79 0.2553
mode 44 3.84 0.3972
mode 45 3.87 0.4526
mode 46 3.90 0.1102
mode 47 3.91 0.5692
mode 48 3.93 0.4427
mode 49 3.97 0.0284
mode 50 4.08 0.1001
mode 51 4.10 0.5907
mode 52 4.12 0.4662
mode 53 4.13 0.4516
mode 54 4.16 0.6786
mode 55 4.36 0.5781
mode 56 4.38 0.5978
mode 57 4.40 0.6826
mode 58 4.50 0.5575
mode 59 4.51 0.5003
mode 60 4.52 0.5236
mode 61 4.61 0.6785
mode 62 4.61 0.6577
mode 63 4.62 0.6559
mode 64 4.69 0.5546
mode 65 4.71 0.5232
mode 66 4.72 0.5314
mode 67 4.76 0.6066
mode 68 4.92 0.5973
mode 69 4.94 0.5999
mode 70 4.94 0.6155
mode 71 5.01 0.6619
mode 72 5.03 0.6595
mode 73 5.09 0.6341
mode 74 5.28 0.6744
mode 75 5.29 0.6632
mode 76 5.31 0.5671
mode 77 5.32 0.5772
mode 78 5.33 0.5664
mode 79 5.35 0.5703
mode 80 5.44 0.4802
mode 81 5.49 0.5398
mode 82 5.52 0.5203
mode 83 5.53 0.5266
mode 84 5.62 0.6394
mode 85 5.62 0.6404
mode 86 5.68 0.4231
mode 87 5.72 0.3162
mode 88 5.75 0.1455
mode 89 5.76 0.2958
mode 90 5.79 0.2691
mode 91 5.80 0.2977
mode 92 5.82 0.3352
mode 93 5.91 0.2914
mode 94 5.91 0.2616
mode 95 5.95 0.2762
mode 96 5.98 0.4829
mode 97 6.00 0.2984
mode 98 6.04 0.3903
mode 99 6.05 0.4057
mode 100 6.08 0.2108
mode 101 6.13 0.5210
mode 102 6.13 0.5024
mode 103 6.13 0.5409
mode 104 6.26 0.4177
mode 105 6.31 0.5188
mode 106 6.32 0.5288

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.