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Normal Mode Analysis for ID EXAMPLE4

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.5841
mode 8 1.02 0.5680
mode 9 1.25 0.6704
mode 10 1.93 0.6532
mode 11 2.05 0.5646
mode 12 2.22 0.6055
mode 13 2.41 0.6696
mode 14 2.58 0.2739
mode 15 2.71 0.2989
mode 16 2.91 0.3010
mode 17 2.97 0.4268
mode 18 3.14 0.2551
mode 19 3.19 0.6371
mode 20 3.22 0.5042
mode 21 3.28 0.4060
mode 22 3.35 0.3497
mode 23 3.44 0.3737
mode 24 3.54 0.3213
mode 25 3.59 0.1331
mode 26 3.60 0.1241
mode 27 3.74 0.2625
mode 28 3.93 0.3701
mode 29 3.96 0.4354
mode 30 3.98 0.3048
mode 31 4.02 0.3391
mode 32 4.08 0.2792
mode 33 4.11 0.1723
mode 34 4.17 0.1792
mode 35 4.26 0.2253
mode 36 4.28 0.3030
mode 37 4.30 0.1683
mode 38 4.42 0.5033
mode 39 4.53 0.3349
mode 40 4.57 0.4219
mode 41 4.60 0.4542
mode 42 4.68 0.3698
mode 43 4.73 0.5281
mode 44 4.77 0.3714
mode 45 4.82 0.4600
mode 46 4.87 0.4594
mode 47 4.95 0.3540
mode 48 5.02 0.4368
mode 49 5.08 0.3765
mode 50 5.12 0.3481
mode 51 5.18 0.3422
mode 52 5.24 0.5142
mode 53 5.36 0.5215
mode 54 5.39 0.5778
mode 55 5.42 0.3567
mode 56 5.45 0.4145
mode 57 5.48 0.4307
mode 58 5.55 0.6276
mode 59 5.60 0.3704
mode 60 5.66 0.3831
mode 61 5.68 0.4217
mode 62 5.69 0.3265
mode 63 5.72 0.4907
mode 64 5.78 0.4211
mode 65 5.79 0.2770
mode 66 5.83 0.5101
mode 67 5.88 0.2296
mode 68 5.90 0.4245
mode 69 5.95 0.3689
mode 70 5.98 0.4259
mode 71 6.02 0.4733
mode 72 6.07 0.3372
mode 73 6.10 0.3526
mode 74 6.13 0.4054
mode 75 6.15 0.4480
mode 76 6.21 0.3945
mode 77 6.23 0.4435
mode 78 6.25 0.3291
mode 79 6.30 0.2615
mode 80 6.33 0.2411
mode 81 6.35 0.4024
mode 82 6.38 0.4132
mode 83 6.40 0.4135
mode 84 6.45 0.5022
mode 85 6.46 0.4994
mode 86 6.49 0.4375
mode 87 6.50 0.5237
mode 88 6.54 0.4553
mode 89 6.59 0.4830
mode 90 6.63 0.5022
mode 91 6.65 0.3830
mode 92 6.69 0.3814
mode 93 6.72 0.4163
mode 94 6.74 0.4706
mode 95 6.81 0.4686
mode 96 6.82 0.4711
mode 97 6.88 0.4759
mode 98 6.90 0.4712
mode 99 6.95 0.4650
mode 100 6.98 0.4388
mode 101 7.00 0.5126
mode 102 7.02 0.4989
mode 103 7.04 0.5354
mode 104 7.05 0.3677
mode 105 7.10 0.4512
mode 106 7.13 0.4490

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.