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Normal Mode Analysis for ID EXAMPLE3

conformational change will be analysed

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity cumulative overlap amplitude (dq)
mode 7 1.00 0.7407 0.802 -207.3613
mode 8 1.19 0.6116 0.813 -24.2790
mode 9 1.62 0.6860 0.820 -19.9074
mode 10 2.59 0.2976 0.822 -9.0781
mode 11 2.71 0.6239 0.852 -40.4212
mode 12 2.87 0.5745 0.852 0.8893
mode 13 3.01 0.2871 0.852 0.4708
mode 14 3.55 0.1250 0.852 -1.1491
mode 15 3.60 0.2479 0.852 -3.7439
mode 16 3.92 0.4112 0.855 12.1094
mode 17 4.16 0.4957 0.856 -7.8940
mode 18 4.34 0.3024 0.857 6.1729
mode 19 4.54 0.3191 0.857 4.9275
mode 20 4.58 0.5459 0.861 13.8398
mode 21 4.63 0.4131 0.865 14.8559
mode 22 4.96 0.4018 0.867 -11.1501
mode 23 5.01 0.3642 0.868 -5.5757
mode 24 5.16 0.3839 0.868 -1.4181
mode 25 5.27 0.3662 0.868 -3.9397
mode 26 5.37 0.4531 0.868 -0.2033
mode 27 5.39 0.5634 0.868 2.4545
mode 28 5.46 0.5717 0.870 7.6942
mode 29 5.51 0.4871 0.874 14.9442
mode 30 5.71 0.4100 0.874 2.1242
mode 31 5.77 0.4250 0.874 -0.3396
mode 32 5.79 0.3388 0.874 -0.3150
mode 33 5.82 0.3708 0.875 -8.7750
mode 34 5.90 0.3957 0.877 9.4780
mode 35 6.00 0.5398 0.878 -5.9841
mode 36 6.07 0.4174 0.878 -0.5237
mode 37 6.10 0.3752 0.878 2.8347
mode 38 6.19 0.5627 0.879 -6.5009
mode 39 6.24 0.4691 0.881 -12.0584
mode 40 6.38 0.4274 0.882 -5.6931
mode 41 6.45 0.3891 0.882 -3.5285
mode 42 6.54 0.3573 0.882 3.4075
mode 43 6.57 0.4567 0.882 1.0318
mode 44 6.67 0.5432 0.885 -12.3488
mode 45 6.74 0.4236 0.886 7.1154
mode 46 6.87 0.4518 0.886 -1.2993
mode 47 6.89 0.5129 0.886 -2.8062
mode 48 6.98 0.5541 0.889 12.6420
mode 49 7.02 0.4654 0.890 6.8403
mode 50 7.12 0.5078 0.891 6.4006
mode 51 7.21 0.6038 0.891 0.2465
mode 52 7.25 0.3476 0.891 2.7165
mode 53 7.34 0.5683 0.891 1.8717
mode 54 7.44 0.4500 0.891 3.1692
mode 55 7.46 0.5165 0.892 -5.1973
mode 56 7.52 0.4418 0.893 7.3019
mode 57 7.61 0.4561 0.893 1.6243
mode 58 7.68 0.4477 0.895 10.1702
mode 59 7.71 0.4522 0.895 -3.3855
mode 60 7.76 0.4052 0.895 -2.5074
mode 61 7.79 0.4465 0.895 0.1092
mode 62 7.82 0.5549 0.897 9.3185
mode 63 7.87 0.5684 0.897 4.2204
mode 64 7.96 0.3968 0.898 5.5046
mode 65 8.16 0.4920 0.898 -5.6796
mode 66 8.22 0.4170 0.900 -8.5972
mode 67 8.25 0.5614 0.900 0.6720
mode 68 8.31 0.5071 0.900 -0.1534
mode 69 8.37 0.4517 0.900 3.7417
mode 70 8.37 0.4229 0.901 6.1706
mode 71 8.45 0.3451 0.901 -1.7221
mode 72 8.45 0.3563 0.901 -4.5026
mode 73 8.49 0.3205 0.901 2.4755
mode 74 8.55 0.5551 0.902 4.9646
mode 75 8.63 0.4420 0.902 -0.5173
mode 76 8.68 0.3776 0.902 0.7444
mode 77 8.68 0.3225 0.902 -4.6702
mode 78 8.78 0.3931 0.903 5.5040
mode 79 8.81 0.3723 0.903 2.6029
mode 80 8.85 0.2865 0.903 1.6265
mode 81 8.87 0.4097 0.904 -6.4885
mode 82 8.92 0.4421 0.904 7.2308
mode 83 9.01 0.3425 0.904 0.5376
mode 84 9.08 0.3599 0.905 -4.1493
mode 85 9.10 0.4465 0.905 4.8417
mode 86 9.15 0.4977 0.905 -0.4707
mode 87 9.18 0.4618 0.906 -5.2207
mode 88 9.23 0.2316 0.907 -7.8653
mode 89 9.30 0.4305 0.909 10.8614
mode 90 9.33 0.2774 0.909 -2.8956
mode 91 9.38 0.4242 0.910 -7.7577
mode 92 9.40 0.2425 0.911 4.2311
mode 93 9.45 0.4245 0.911 0.7441
mode 94 9.57 0.4842 0.911 -4.8027
mode 95 9.57 0.3146 0.912 -5.3191
mode 96 9.60 0.4146 0.912 -0.1601
mode 97 9.66 0.2185 0.913 -7.1878
mode 98 9.68 0.4379 0.913 5.4513
mode 99 9.69 0.3380 0.913 0.1289
mode 100 9.73 0.4310 0.913 2.4976
mode 101 9.78 0.3995 0.914 6.2664
mode 102 9.79 0.3417 0.914 -4.0790
mode 103 9.87 0.4774 0.914 -1.8985
mode 104 9.89 0.5372 0.917 -11.5424
mode 105 9.98 0.4596 0.917 0.5939
mode 106 10.04 0.4241 0.917 1.5722

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.