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Normal Mode Analysis for ID EXAMPLE1

conformational change will be analysed

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 2 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity cumulative overlap amplitude (dq)
mode 7 1.00 0.0652 0.005 -2.7823
mode 8 1.22 0.1124 0.418 23.6904
mode 9 1.29 0.1132 0.425 -3.0079
mode 10 1.41 0.1859 0.438 -4.4538
mode 11 1.78 0.0253 0.439 -1.1549
mode 12 1.83 0.3070 0.440 -1.0060
mode 13 1.96 0.2905 0.444 -2.0342
mode 14 2.11 0.2191 0.446 -1.5298
mode 15 2.25 0.1796 0.446 -0.1837
mode 16 2.42 0.2148 0.447 -1.0709
mode 17 2.73 0.2094 0.449 1.9155
mode 18 2.85 0.1485 0.454 -2.5641
mode 19 3.00 0.3014 0.456 1.6157
mode 20 3.06 0.0805 0.456 0.9744
mode 21 3.14 0.2623 0.457 -1.0261
mode 22 3.18 0.1212 0.459 -1.8432
mode 23 3.36 0.3514 0.472 3.9870
mode 24 3.55 0.2608 0.474 -1.6504
mode 25 3.62 0.3727 0.484 -3.9238
mode 26 3.72 0.2156 0.486 1.6607
mode 27 3.76 0.4263 0.487 -1.0918
mode 28 3.91 0.1572 0.493 -2.7310
mode 29 3.98 0.2123 0.494 -0.2934
mode 30 4.19 0.2233 0.494 0.6584
mode 31 4.23 0.3769 0.494 -0.9540
mode 32 4.30 0.2763 0.496 -1.4098
mode 33 4.34 0.3329 0.496 0.1161
mode 34 4.39 0.3827 0.497 1.1358
mode 35 4.48 0.2396 0.498 1.4379
mode 36 4.54 0.3438 0.499 -1.1809
mode 37 4.62 0.2949 0.500 1.0962
mode 38 4.69 0.1247 0.503 2.0191
mode 39 4.74 0.3736 0.504 1.0211
mode 40 4.81 0.3356 0.504 -0.5175
mode 41 4.90 0.2947 0.507 -1.9405
mode 42 5.07 0.3481 0.509 1.9680
mode 43 5.15 0.1447 0.510 0.8464
mode 44 5.17 0.3780 0.510 0.7629
mode 45 5.35 0.4072 0.511 -0.6950
mode 46 5.35 0.4286 0.512 1.2380
mode 47 5.39 0.2321 0.513 1.4539
mode 48 5.42 0.2867 0.519 2.5984
mode 49 5.49 0.4843 0.519 -0.1629
mode 50 5.54 0.3512 0.523 -2.4353
mode 51 5.58 0.3818 0.523 0.2867
mode 52 5.65 0.3525 0.524 0.7391
mode 53 5.75 0.1916 0.524 -0.2086
mode 54 5.78 0.3993 0.524 -0.5625
mode 55 5.83 0.3992 0.524 -0.1303
mode 56 5.86 0.1488 0.525 1.0315
mode 57 5.93 0.1671 0.526 1.3526
mode 58 5.97 0.2535 0.526 0.9718
mode 59 6.01 0.2806 0.531 -2.4461
mode 60 6.07 0.3227 0.531 -0.1387
mode 61 6.13 0.0269 0.531 0.2422
mode 62 6.14 0.4007 0.532 1.0841
mode 63 6.19 0.3061 0.532 -0.2692
mode 64 6.26 0.2796 0.533 1.4559
mode 65 6.30 0.2239 0.533 0.5858
mode 66 6.34 0.3239 0.542 -3.2701
mode 67 6.41 0.3267 0.544 -1.5067
mode 68 6.47 0.3467 0.544 -0.4818
mode 69 6.51 0.3943 0.545 -1.4358
mode 70 6.65 0.3963 0.545 0.2199
mode 71 6.69 0.2863 0.546 -1.0224
mode 72 6.75 0.2863 0.546 0.5411
mode 73 6.79 0.3526 0.546 0.3658
mode 74 6.84 0.3611 0.546 -0.3350
mode 75 6.89 0.2730 0.547 -0.9677
mode 76 6.95 0.2304 0.548 1.1325
mode 77 7.05 0.0910 0.548 -0.5153
mode 78 7.11 0.4803 0.549 -0.8789
mode 79 7.15 0.4201 0.549 0.0271
mode 80 7.18 0.1359 0.549 -0.0446
mode 81 7.24 0.2312 0.553 -2.4839
mode 82 7.25 0.1947 0.553 0.4878
mode 83 7.28 0.3593 0.553 -0.2060
mode 84 7.30 0.4600 0.554 0.9737
mode 85 7.41 0.4518 0.555 -1.1256
mode 86 7.50 0.2203 0.555 0.0839
mode 87 7.55 0.2415 0.555 -0.7798
mode 88 7.57 0.3510 0.555 -0.1598
mode 89 7.59 0.3599 0.555 -0.3818
mode 90 7.63 0.0841 0.555 -0.2499
mode 91 7.70 0.3570 0.558 -2.0235
mode 92 7.71 0.1867 0.563 2.5950
mode 93 7.76 0.1629 0.563 0.0965
mode 94 7.80 0.0985 0.563 -0.0431
mode 95 7.81 0.3097 0.563 -0.8297
mode 96 7.87 0.4126 0.564 1.1147
mode 97 7.92 0.0338 0.564 0.4172
mode 98 7.96 0.2418 0.565 0.6258
mode 99 7.99 0.4343 0.571 -2.6857
mode 100 8.03 0.3319 0.575 2.5534
mode 101 8.05 0.1118 0.575 -0.1560
mode 102 8.09 0.3260 0.576 0.5471
mode 103 8.15 0.4037 0.577 1.6015
mode 104 8.16 0.2740 0.577 -0.1359
mode 105 8.21 0.2929 0.579 1.3167
mode 106 8.23 0.1008 0.579 0.2323

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.