CNRS Nantes University UFIP UFIP
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.


***  PDZ  ***

Normal Mode Analysis for ID 23011717492782876

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.1902
mode 8 1.18 0.3821
mode 9 1.35 0.3913
mode 10 1.59 0.4589
mode 11 1.79 0.5029
mode 12 1.84 0.3190
mode 13 2.30 0.2159
mode 14 2.36 0.4767
mode 15 2.51 0.6306
mode 16 2.61 0.5501
mode 17 2.69 0.5884
mode 18 2.92 0.5249
mode 19 2.99 0.5753
mode 20 3.00 0.6430
mode 21 3.07 0.4587
mode 22 3.16 0.4767
mode 23 3.27 0.0067
mode 24 3.27 0.0132
mode 25 3.28 0.3657
mode 26 3.29 0.0185
mode 27 3.29 0.0695
mode 28 3.30 0.0547
mode 29 3.31 0.1839
mode 30 3.31 0.0083
mode 31 3.32 0.0080
mode 32 3.32 0.0072
mode 33 3.33 0.0107
mode 34 3.34 0.0211
mode 35 3.34 0.0439
mode 36 3.35 0.0118
mode 37 3.35 0.0265
mode 38 3.36 0.0098
mode 39 3.36 0.0096
mode 40 3.37 0.0181
mode 41 3.38 0.0246
mode 42 3.38 0.0103
mode 43 3.42 0.6142
mode 44 3.47 0.3197
mode 45 3.54 0.5929
mode 46 3.58 0.5688
mode 47 3.67 0.4766
mode 48 3.71 0.6376
mode 49 3.78 0.6276
mode 50 3.80 0.0111
mode 51 3.81 0.2479
mode 52 3.83 0.0603
mode 53 3.87 0.0092
mode 54 3.87 0.0146
mode 55 3.87 0.0141
mode 56 3.88 0.0087
mode 57 3.88 0.5195
mode 58 3.90 0.0088
mode 59 3.92 0.0086
mode 60 3.94 0.0208
mode 61 3.94 0.0485
mode 62 3.95 0.0136
mode 63 3.95 0.0238
mode 64 3.95 0.0119
mode 65 3.96 0.0754
mode 66 3.96 0.0319
mode 67 3.96 0.0312
mode 68 3.97 0.0877
mode 69 3.98 0.0081
mode 70 3.99 0.0184
mode 71 3.99 0.0134
mode 72 4.00 0.1503
mode 73 4.02 0.0105
mode 74 4.03 0.1899
mode 75 4.05 0.4670
mode 76 4.07 0.0128
mode 77 4.08 0.0179
mode 78 4.11 0.0353
mode 79 4.12 0.0137
mode 80 4.13 0.0155
mode 81 4.14 0.1927
mode 82 4.15 0.1960
mode 83 4.15 0.1170
mode 84 4.16 0.2965
mode 85 4.18 0.0074
mode 86 4.19 0.1005
mode 87 4.20 0.0298
mode 88 4.20 0.0364
mode 89 4.21 0.0275
mode 90 4.21 0.0168
mode 91 4.21 0.0526
mode 92 4.23 0.4563
mode 93 4.23 0.0150
mode 94 4.24 0.0130
mode 95 4.24 0.1130
mode 96 4.24 0.0107
mode 97 4.25 0.0585
mode 98 4.25 0.0448
mode 99 4.26 0.0346
mode 100 4.27 0.0872
mode 101 4.28 0.0254
mode 102 4.29 0.0177
mode 103 4.29 0.1217
mode 104 4.30 0.0142
mode 105 4.30 0.0148
mode 106 4.31 0.0223

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.