CNRS Nantes University UFIP UFIP
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.


***  AlphaFold  ***

Normal Mode Analysis for ID 23010308584016806

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 3 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0430
mode 8 1.16 0.0809
mode 9 1.21 0.1079
mode 10 1.43 0.0587
mode 11 2.31 0.3677
mode 12 3.29 0.0604
mode 13 3.65 0.4063
mode 14 4.17 0.0938
mode 15 4.75 0.0762
mode 16 5.50 0.0487
mode 17 6.66 0.0854
mode 18 7.53 0.1992
mode 19 8.48 0.0510
mode 20 8.54 0.1321
mode 21 9.93 0.2585
mode 22 12.08 0.2215
mode 23 12.56 0.2589
mode 24 13.92 0.2084
mode 25 14.74 0.0263
mode 26 15.06 0.2257
mode 27 17.62 0.1818
mode 28 18.30 0.2587
mode 29 18.58 0.1439
mode 30 18.82 0.2302
mode 31 19.23 0.3110
mode 32 20.97 0.1417
mode 33 21.33 0.1555
mode 34 22.46 0.0219
mode 35 22.56 0.3299
mode 36 23.67 0.0317
mode 37 24.50 0.1739
mode 38 24.66 0.0520
mode 39 26.43 0.4076
mode 40 27.25 0.3071
mode 41 28.80 0.0562
mode 42 28.82 0.0430
mode 43 30.45 0.3506
mode 44 31.30 0.1539
mode 45 31.77 0.2974
mode 46 31.91 0.1933
mode 47 32.24 0.2822
mode 48 33.12 0.0285
mode 49 33.55 0.2043
mode 50 35.01 0.1995
mode 51 35.60 0.3490
mode 52 35.95 0.1240
mode 53 37.20 0.4085
mode 54 38.11 0.1196
mode 55 38.77 0.3256
mode 56 39.27 0.1322
mode 57 39.99 0.3858
mode 58 40.78 0.1869
mode 59 41.49 0.2794
mode 60 41.96 0.1035
mode 61 42.72 0.0531
mode 62 42.87 0.2855
mode 63 43.98 0.3907
mode 64 44.78 0.3546
mode 65 45.78 0.4052
mode 66 46.18 0.3591
mode 67 47.54 0.2358
mode 68 47.69 0.3105
mode 69 48.15 0.4436
mode 70 49.03 0.4666
mode 71 49.50 0.0972
mode 72 49.84 0.3111
mode 73 51.52 0.5087
mode 74 51.92 0.2684
mode 75 52.12 0.0341
mode 76 52.58 0.4098
mode 77 53.71 0.2916
mode 78 54.17 0.3639
mode 79 54.71 0.2180
mode 80 55.32 0.1763
mode 81 55.76 0.3968
mode 82 56.00 0.2622
mode 83 56.52 0.4557
mode 84 57.15 0.1366
mode 85 57.55 0.3804
mode 86 58.22 0.4581
mode 87 58.44 0.3237
mode 88 58.91 0.2567
mode 89 59.35 0.2486
mode 90 59.83 0.3345
mode 91 60.27 0.2046
mode 92 60.87 0.0408
mode 93 61.38 0.4336
mode 94 61.68 0.3002
mode 95 61.94 0.4510
mode 96 62.95 0.4152
mode 97 63.38 0.2269
mode 98 64.07 0.3380
mode 99 64.42 0.3870
mode 100 65.04 0.1339
mode 101 65.61 0.2330
mode 102 65.93 0.2126
mode 103 66.20 0.2710
mode 104 66.63 0.3452
mode 105 66.89 0.3302
mode 106 67.28 0.4772

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.