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***  struct  ***

Normal Mode Analysis for ID 22123022351880756

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 3 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0135
mode 8 1.22 0.0268
mode 9 2.13 0.6948
mode 10 2.60 0.3934
mode 11 3.48 0.0934
mode 12 3.65 0.1986
mode 13 4.13 0.2526
mode 14 4.40 0.0867
mode 15 4.71 0.2068
mode 16 5.55 0.3797
mode 17 6.41 0.1530
mode 18 6.73 0.2451
mode 19 7.39 0.5328
mode 20 8.00 0.7274
mode 21 8.31 0.0509
mode 22 9.09 0.3511
mode 23 9.45 0.3850
mode 24 9.97 0.1244
mode 25 10.71 0.0126
mode 26 11.01 0.3341
mode 27 11.44 0.4037
mode 28 12.09 0.1903
mode 29 12.36 0.4233
mode 30 12.50 0.2154
mode 31 12.58 0.4000
mode 32 13.05 0.2997
mode 33 13.38 0.1628
mode 34 13.97 0.1579
mode 35 14.18 0.1498
mode 36 14.65 0.2668
mode 37 14.80 0.3910
mode 38 15.13 0.2391
mode 39 15.23 0.2105
mode 40 15.46 0.2275
mode 41 15.53 0.4011
mode 42 15.91 0.1767
mode 43 16.05 0.3692
mode 44 16.15 0.0293
mode 45 16.38 0.4049
mode 46 16.72 0.3096
mode 47 16.95 0.4340
mode 48 17.39 0.3365
mode 49 17.44 0.4705
mode 50 17.79 0.1801
mode 51 17.90 0.5120
mode 52 18.24 0.3939
mode 53 18.74 0.2791
mode 54 18.96 0.2969
mode 55 19.10 0.4224
mode 56 19.26 0.1317
mode 57 19.63 0.4580
mode 58 19.85 0.3846
mode 59 19.91 0.4481
mode 60 20.05 0.2035
mode 61 20.32 0.3434
mode 62 20.38 0.3165
mode 63 20.51 0.3953
mode 64 20.66 0.1953
mode 65 21.15 0.3208
mode 66 21.29 0.1844
mode 67 21.31 0.2352
mode 68 21.71 0.4064
mode 69 21.85 0.3300
mode 70 22.13 0.3395
mode 71 22.20 0.2892
mode 72 22.41 0.2820
mode 73 22.54 0.1297
mode 74 22.81 0.2315
mode 75 23.00 0.1996
mode 76 23.16 0.1920
mode 77 23.25 0.3002
mode 78 23.34 0.3369
mode 79 23.39 0.2273
mode 80 23.68 0.4325
mode 81 23.87 0.2786
mode 82 23.98 0.3158
mode 83 24.13 0.4487
mode 84 24.29 0.1635
mode 85 24.63 0.3269
mode 86 24.69 0.2952
mode 87 24.71 0.2398
mode 88 25.27 0.2065
mode 89 25.40 0.3860
mode 90 25.42 0.3874
mode 91 25.52 0.4080
mode 92 25.66 0.2518
mode 93 25.99 0.3641
mode 94 26.03 0.4919
mode 95 26.13 0.4123
mode 96 26.24 0.1643
mode 97 26.43 0.3901
mode 98 26.50 0.3781
mode 99 26.61 0.3319
mode 100 27.01 0.4029
mode 101 27.14 0.3083
mode 102 27.33 0.3825
mode 103 27.48 0.4290
mode 104 27.69 0.3118
mode 105 27.84 0.4443
mode 106 27.88 0.2250

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.