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Normal Mode Analysis for ID 22122720105119216

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 2 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.5740
mode 8 1.21 0.6122
mode 9 1.71 0.0806
mode 10 1.87 0.5848
mode 11 2.03 0.0140
mode 12 2.14 0.4378
mode 13 2.35 0.5381
mode 14 2.40 0.5790
mode 15 2.54 0.5307
mode 16 2.73 0.1720
mode 17 2.81 0.1748
mode 18 2.91 0.2812
mode 19 2.99 0.5369
mode 20 3.05 0.5232
mode 21 3.23 0.2516
mode 22 3.30 0.4549
mode 23 3.37 0.3411
mode 24 3.60 0.0748
mode 25 3.62 0.2586
mode 26 3.66 0.4793
mode 27 3.68 0.3579
mode 28 3.74 0.4706
mode 29 3.86 0.2145
mode 30 3.88 0.4506
mode 31 3.96 0.2876
mode 32 4.07 0.4080
mode 33 4.19 0.3300
mode 34 4.19 0.1131
mode 35 4.29 0.2267
mode 36 4.36 0.4077
mode 37 4.38 0.3590
mode 38 4.47 0.3345
mode 39 4.51 0.4050
mode 40 4.53 0.4806
mode 41 4.64 0.5719
mode 42 4.67 0.3480
mode 43 4.77 0.5227
mode 44 4.81 0.5016
mode 45 4.87 0.4063
mode 46 4.92 0.4152
mode 47 4.98 0.3857
mode 48 5.10 0.5111
mode 49 5.13 0.0194
mode 50 5.18 0.4209
mode 51 5.19 0.3822
mode 52 5.22 0.3607
mode 53 5.26 0.3464
mode 54 5.31 0.4212
mode 55 5.38 0.5424
mode 56 5.43 0.2441
mode 57 5.46 0.3834
mode 58 5.58 0.4794
mode 59 5.61 0.3001
mode 60 5.68 0.5718
mode 61 5.69 0.4076
mode 62 5.72 0.5217
mode 63 5.74 0.4466
mode 64 5.79 0.3287
mode 65 5.84 0.3934
mode 66 5.90 0.3862
mode 67 5.93 0.3871
mode 68 5.96 0.4118
mode 69 6.05 0.4430
mode 70 6.07 0.4769
mode 71 6.09 0.3248
mode 72 6.12 0.3228
mode 73 6.13 0.3215
mode 74 6.21 0.3200
mode 75 6.21 0.4095
mode 76 6.28 0.2867
mode 77 6.30 0.4039
mode 78 6.33 0.3595
mode 79 6.39 0.4613
mode 80 6.40 0.4105
mode 81 6.46 0.3364
mode 82 6.52 0.5042
mode 83 6.55 0.4636
mode 84 6.57 0.4264
mode 85 6.60 0.4178
mode 86 6.66 0.3952
mode 87 6.70 0.3794
mode 88 6.74 0.4236
mode 89 6.80 0.4114
mode 90 6.83 0.4685
mode 91 6.83 0.4111
mode 92 6.85 0.3322
mode 93 6.87 0.4231
mode 94 6.93 0.1803
mode 95 6.98 0.5543
mode 96 7.02 0.5128
mode 97 7.07 0.4265
mode 98 7.12 0.5060
mode 99 7.17 0.4600
mode 100 7.19 0.2163
mode 101 7.20 0.4901
mode 102 7.21 0.3293
mode 103 7.28 0.4083
mode 104 7.31 0.4562
mode 105 7.40 0.1895
mode 106 7.41 0.4712

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.