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Normal Mode Analysis for ID 221017152136145846

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 3 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0047
mode 8 1.24 0.0141
mode 9 1.30 0.5927
mode 10 1.43 0.0056
mode 11 1.75 0.6635
mode 12 2.27 0.6439
mode 13 2.99 0.0162
mode 14 3.71 0.3685
mode 15 3.99 0.0857
mode 16 4.32 0.2000
mode 17 4.75 0.5047
mode 18 5.06 0.3643
mode 19 5.73 0.0606
mode 20 6.33 0.3001
mode 21 6.52 0.0949
mode 22 6.78 0.4958
mode 23 7.43 0.4766
mode 24 8.45 0.1825
mode 25 8.63 0.3939
mode 26 8.88 0.1586
mode 27 9.62 0.1869
mode 28 10.51 0.5762
mode 29 11.07 0.4259
mode 30 11.36 0.1221
mode 31 11.41 0.3262
mode 32 12.40 0.4375
mode 33 12.59 0.0500
mode 34 13.30 0.5102
mode 35 14.03 0.4366
mode 36 14.49 0.2662
mode 37 15.35 0.3821
mode 38 15.75 0.5333
mode 39 16.35 0.6430
mode 40 17.18 0.4538
mode 41 17.68 0.6562
mode 42 19.68 0.5843
mode 43 20.46 0.0239
mode 44 21.07 0.3516
mode 45 21.45 0.3526
mode 46 22.06 0.5365
mode 47 22.38 0.3368
mode 48 23.17 0.3943
mode 49 23.27 0.0806
mode 50 23.77 0.2489
mode 51 24.23 0.4152
mode 52 25.41 0.4433
mode 53 25.93 0.4401
mode 54 26.10 0.3708
mode 55 26.44 0.3888
mode 56 27.02 0.5683
mode 57 27.58 0.3937
mode 58 29.20 0.1881
mode 59 29.90 0.4474
mode 60 30.14 0.4538
mode 61 30.98 0.1851
mode 62 31.02 0.0581
mode 63 32.07 0.0267
mode 64 32.58 0.2033
mode 65 32.82 0.2417
mode 66 33.15 0.3557
mode 67 33.35 0.0889
mode 68 34.11 0.1290
mode 69 34.57 0.3815
mode 70 35.07 0.2319
mode 71 35.46 0.1817
mode 72 35.61 0.3331
mode 73 35.85 0.0851
mode 74 36.50 0.3382
mode 75 36.71 0.3938
mode 76 37.21 0.3558
mode 77 37.59 0.2670
mode 78 37.65 0.3451
mode 79 38.17 0.1871
mode 80 38.93 0.0422
mode 81 39.45 0.3555
mode 82 40.01 0.0584
mode 83 40.54 0.1795
mode 84 40.86 0.3560
mode 85 41.13 0.3222
mode 86 41.63 0.4768
mode 87 42.11 0.2864
mode 88 42.19 0.2602
mode 89 42.43 0.3932
mode 90 43.11 0.1912
mode 91 43.55 0.0794
mode 92 43.71 0.2175
mode 93 44.09 0.1410
mode 94 44.68 0.2273
mode 95 44.87 0.3303
mode 96 45.68 0.3145
mode 97 45.85 0.3316
mode 98 46.40 0.2960
mode 99 46.48 0.0624
mode 100 46.87 0.4859
mode 101 47.06 0.3842
mode 102 47.63 0.3968
mode 103 48.03 0.3179
mode 104 48.54 0.2720
mode 105 48.81 0.3624
mode 106 49.48 0.1516

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.