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***  VIRAL PROTEIN/RNA BINDING PROTEIN 31-JUL-12 4B4N  ***

Normal Mode Analysis for ID 22101122370966482

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 1 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.1333
mode 8 1.26 0.0868
mode 9 1.85 0.2278
mode 10 1.98 0.4558
mode 11 2.09 0.2386
mode 12 2.34 0.1889
mode 13 2.49 0.1208
mode 14 2.52 0.1116
mode 15 2.68 0.4028
mode 16 2.79 0.1793
mode 17 2.90 0.1052
mode 18 3.01 0.2361
mode 19 3.07 0.2890
mode 20 3.18 0.3252
mode 21 3.32 0.2912
mode 22 3.40 0.1020
mode 23 3.53 0.2868
mode 24 3.62 0.2921
mode 25 3.67 0.0888
mode 26 3.84 0.0971
mode 27 3.89 0.2899
mode 28 3.95 0.3554
mode 29 4.02 0.3698
mode 30 4.10 0.5639
mode 31 4.20 0.1078
mode 32 4.30 0.2345
mode 33 4.35 0.3854
mode 34 4.37 0.2369
mode 35 4.42 0.1424
mode 36 4.49 0.1938
mode 37 4.50 0.2313
mode 38 4.74 0.3973
mode 39 4.78 0.5340
mode 40 4.87 0.2995
mode 41 4.97 0.3066
mode 42 5.03 0.4043
mode 43 5.10 0.2264
mode 44 5.22 0.5496
mode 45 5.26 0.3596
mode 46 5.36 0.4004
mode 47 5.43 0.4519
mode 48 5.50 0.0592
mode 49 5.51 0.1921
mode 50 5.58 0.5105
mode 51 5.68 0.3942
mode 52 5.73 0.3302
mode 53 5.82 0.4559
mode 54 5.88 0.3638
mode 55 5.91 0.4525
mode 56 6.05 0.4187
mode 57 6.05 0.4073
mode 58 6.12 0.3815
mode 59 6.16 0.4127
mode 60 6.19 0.3204
mode 61 6.22 0.2502
mode 62 6.27 0.3059
mode 63 6.36 0.3386
mode 64 6.46 0.3269
mode 65 6.49 0.0609
mode 66 6.52 0.2082
mode 67 6.53 0.3901
mode 68 6.56 0.4358
mode 69 6.66 0.4658
mode 70 6.71 0.2779
mode 71 6.76 0.2535
mode 72 6.83 0.4551
mode 73 6.84 0.1457
mode 74 6.88 0.4045
mode 75 6.91 0.2111
mode 76 6.97 0.4118
mode 77 7.03 0.4579
mode 78 7.07 0.4521
mode 79 7.12 0.3732
mode 80 7.14 0.3584
mode 81 7.16 0.4399
mode 82 7.20 0.0356
mode 83 7.22 0.3968
mode 84 7.24 0.1489
mode 85 7.27 0.1398
mode 86 7.33 0.0952
mode 87 7.35 0.1041
mode 88 7.38 0.2690
mode 89 7.41 0.3316
mode 90 7.42 0.3391
mode 91 7.43 0.4829
mode 92 7.59 0.3807
mode 93 7.62 0.3461
mode 94 7.65 0.3370
mode 95 7.71 0.4066
mode 96 7.73 0.5029
mode 97 7.76 0.3766
mode 98 7.79 0.3618
mode 99 7.86 0.4395
mode 100 7.92 0.0641
mode 101 7.95 0.2899
mode 102 7.99 0.2349
mode 103 8.01 0.1421
mode 104 8.04 0.3014
mode 105 8.05 0.1312
mode 106 8.08 0.4165

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.