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***  4m8  ***

Normal Mode Analysis for ID 22092722260083457

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 1 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0316
mode 8 1.23 0.4654
mode 9 1.40 0.4545
mode 10 1.81 0.1225
mode 11 1.94 0.2720
mode 12 2.56 0.1388
mode 13 2.88 0.4139
mode 14 2.98 0.3365
mode 15 3.25 0.2769
mode 16 3.58 0.4312
mode 17 3.81 0.3260
mode 18 3.82 0.5845
mode 19 4.22 0.5473
mode 20 4.34 0.0753
mode 21 4.64 0.3484
mode 22 4.74 0.3600
mode 23 4.88 0.5395
mode 24 5.10 0.1095
mode 25 5.37 0.5541
mode 26 5.78 0.4954
mode 27 5.98 0.2246
mode 28 6.08 0.4543
mode 29 6.19 0.3157
mode 30 6.26 0.4271
mode 31 6.51 0.1453
mode 32 6.60 0.3121
mode 33 6.69 0.4536
mode 34 6.78 0.5790
mode 35 6.88 0.3731
mode 36 6.98 0.2831
mode 37 7.07 0.4079
mode 38 7.25 0.1642
mode 39 7.34 0.2049
mode 40 7.42 0.4973
mode 41 7.60 0.2803
mode 42 7.74 0.1672
mode 43 7.84 0.1073
mode 44 7.91 0.2371
mode 45 8.06 0.2897
mode 46 8.13 0.3338
mode 47 8.16 0.3492
mode 48 8.31 0.4382
mode 49 8.45 0.4221
mode 50 8.55 0.2552
mode 51 8.59 0.2981
mode 52 8.83 0.2753
mode 53 8.87 0.3923
mode 54 8.93 0.3540
mode 55 9.03 0.1164
mode 56 9.20 0.3971
mode 57 9.28 0.3321
mode 58 9.39 0.4373
mode 59 9.44 0.3326
mode 60 9.50 0.2745
mode 61 9.59 0.3523
mode 62 9.64 0.2611
mode 63 9.74 0.3725
mode 64 9.91 0.2970
mode 65 9.97 0.3684
mode 66 10.00 0.4030
mode 67 10.10 0.5389
mode 68 10.13 0.2448
mode 69 10.21 0.3463
mode 70 10.25 0.3724
mode 71 10.36 0.3799
mode 72 10.43 0.4148
mode 73 10.52 0.2297
mode 74 10.58 0.4409
mode 75 10.62 0.4009
mode 76 10.80 0.2702
mode 77 10.84 0.3825
mode 78 10.86 0.4760
mode 79 10.91 0.4412
mode 80 10.96 0.4836
mode 81 11.02 0.3154
mode 82 11.22 0.5151
mode 83 11.25 0.2948
mode 84 11.37 0.2628
mode 85 11.42 0.4610
mode 86 11.49 0.2952
mode 87 11.55 0.4080
mode 88 11.60 0.3296
mode 89 11.65 0.3504
mode 90 11.74 0.3425
mode 91 11.80 0.4398
mode 92 11.82 0.3594
mode 93 11.88 0.3831
mode 94 11.93 0.4545
mode 95 11.93 0.3842
mode 96 12.07 0.4481
mode 97 12.19 0.4109
mode 98 12.25 0.3887
mode 99 12.32 0.2602
mode 100 12.37 0.4547
mode 101 12.40 0.2496
mode 102 12.45 0.3869
mode 103 12.53 0.3456
mode 104 12.56 0.3450
mode 105 12.62 0.2444
mode 106 12.65 0.4462

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.