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Normal Mode Analysis for ID 220529192543142152

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 1 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.2564
mode 8 1.13 0.1044
mode 9 2.18 0.2763
mode 10 3.26 0.0396
mode 11 3.79 0.1694
mode 12 4.13 0.0978
mode 13 4.38 0.0807
mode 14 4.47 0.1650
mode 15 4.96 0.2393
mode 16 5.31 0.2844
mode 17 5.84 0.3384
mode 18 6.06 0.1112
mode 19 6.40 0.2660
mode 20 6.70 0.2617
mode 21 6.99 0.2538
mode 22 7.26 0.2811
mode 23 7.40 0.2574
mode 24 7.65 0.4394
mode 25 8.40 0.2621
mode 26 8.68 0.2474
mode 27 9.14 0.4175
mode 28 9.28 0.3203
mode 29 9.77 0.3704
mode 30 10.36 0.2965
mode 31 10.59 0.2910
mode 32 10.79 0.2380
mode 33 11.26 0.4070
mode 34 11.56 0.3179
mode 35 11.82 0.3541
mode 36 12.31 0.1620
mode 37 12.56 0.2817
mode 38 12.67 0.2322
mode 39 13.25 0.4565
mode 40 13.49 0.5409
mode 41 13.98 0.1359
mode 42 14.08 0.1810
mode 43 14.15 0.2190
mode 44 14.44 0.1711
mode 45 14.90 0.4804
mode 46 15.25 0.3240
mode 47 16.16 0.4135
mode 48 16.77 0.4847
mode 49 16.95 0.1990
mode 50 17.47 0.3484
mode 51 18.09 0.3648
mode 52 18.19 0.1980
mode 53 18.97 0.1617
mode 54 19.18 0.1906
mode 55 19.61 0.3770
mode 56 19.91 0.2078
mode 57 20.20 0.2706
mode 58 20.52 0.2063
mode 59 20.83 0.2455
mode 60 21.41 0.1863
mode 61 21.61 0.1577
mode 62 21.68 0.3117
mode 63 22.03 0.5385
mode 64 22.29 0.4105
mode 65 23.36 0.3233
mode 66 23.61 0.3010
mode 67 23.78 0.3247
mode 68 23.99 0.3794
mode 69 24.18 0.2367
mode 70 24.26 0.3494
mode 71 24.71 0.4592
mode 72 24.80 0.3167
mode 73 25.39 0.3342
mode 74 26.00 0.2785
mode 75 26.33 0.3006
mode 76 27.01 0.4034
mode 77 27.11 0.1298
mode 78 27.79 0.1123
mode 79 27.91 0.3125
mode 80 28.36 0.4901
mode 81 28.91 0.4422
mode 82 29.64 0.5727
mode 83 29.79 0.5642
mode 84 30.33 0.3976
mode 85 30.78 0.2045
mode 86 31.38 0.5340
mode 87 31.68 0.2457
mode 88 31.90 0.4157
mode 89 32.33 0.3003
mode 90 32.52 0.1750
mode 91 33.09 0.3540
mode 92 33.37 0.4196
mode 93 33.57 0.3735
mode 94 33.73 0.4484
mode 95 34.01 0.5138
mode 96 34.12 0.2479
mode 97 34.38 0.1683
mode 98 34.84 0.4194
mode 99 35.13 0.4009
mode 100 35.36 0.4014
mode 101 35.48 0.5626
mode 102 35.76 0.4128
mode 103 36.34 0.4934
mode 104 36.85 0.5189
mode 105 37.14 0.5295
mode 106 37.52 0.1438

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.