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Normal Mode Analysis for ID 220512180416120799

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 2 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0826
mode 8 1.32 0.2178
mode 9 1.51 0.0933
mode 10 1.54 0.1439
mode 11 1.65 0.1647
mode 12 1.72 0.2139
mode 13 1.90 0.4219
mode 14 1.97 0.2507
mode 15 2.08 0.2797
mode 16 2.41 0.3099
mode 17 2.43 0.2733
mode 18 2.49 0.2390
mode 19 2.54 0.3002
mode 20 2.73 0.1314
mode 21 2.78 0.1935
mode 22 2.83 0.5831
mode 23 2.84 0.2237
mode 24 2.90 0.0371
mode 25 2.97 0.1874
mode 26 3.02 0.5507
mode 27 3.06 0.1519
mode 28 3.08 0.1976
mode 29 3.16 0.5305
mode 30 3.26 0.2464
mode 31 3.33 0.1297
mode 32 3.39 0.3267
mode 33 3.42 0.1909
mode 34 3.46 0.3710
mode 35 3.53 0.2525
mode 36 3.60 0.3843
mode 37 3.69 0.3973
mode 38 3.74 0.3752
mode 39 3.83 0.2832
mode 40 3.84 0.0685
mode 41 3.87 0.3167
mode 42 3.94 0.2988
mode 43 3.98 0.3814
mode 44 4.06 0.2735
mode 45 4.10 0.5205
mode 46 4.13 0.2834
mode 47 4.19 0.1490
mode 48 4.24 0.3840
mode 49 4.28 0.4653
mode 50 4.30 0.4288
mode 51 4.37 0.3244
mode 52 4.39 0.4021
mode 53 4.42 0.2182
mode 54 4.47 0.3527
mode 55 4.51 0.1938
mode 56 4.57 0.3376
mode 57 4.61 0.2374
mode 58 4.66 0.1558
mode 59 4.70 0.4193
mode 60 4.72 0.3764
mode 61 4.76 0.2783
mode 62 4.81 0.2527
mode 63 4.84 0.2915
mode 64 4.85 0.2909
mode 65 4.90 0.2960
mode 66 4.94 0.4954
mode 67 4.95 0.3742
mode 68 4.96 0.1632
mode 69 5.02 0.3045
mode 70 5.06 0.2744
mode 71 5.11 0.2325
mode 72 5.15 0.3671
mode 73 5.21 0.2343
mode 74 5.24 0.4007
mode 75 5.31 0.2933
mode 76 5.32 0.2524
mode 77 5.33 0.2039
mode 78 5.35 0.2645
mode 79 5.39 0.3825
mode 80 5.45 0.2131
mode 81 5.47 0.1801
mode 82 5.51 0.0677
mode 83 5.51 0.2061
mode 84 5.56 0.2226
mode 85 5.57 0.2662
mode 86 5.59 0.2756
mode 87 5.62 0.3693
mode 88 5.69 0.4183
mode 89 5.71 0.3373
mode 90 5.72 0.1490
mode 91 5.76 0.3221
mode 92 5.78 0.3657
mode 93 5.81 0.2274
mode 94 5.83 0.0677
mode 95 5.87 0.3793
mode 96 5.92 0.2734
mode 97 5.93 0.4129
mode 98 5.94 0.2905
mode 99 6.01 0.4189
mode 100 6.06 0.5484
mode 101 6.08 0.4212
mode 102 6.10 0.2543
mode 103 6.13 0.2337
mode 104 6.15 0.3662
mode 105 6.18 0.4203
mode 106 6.21 0.3357

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.