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***  3BLH_A_VS_4bcg_A  ***

Normal Mode Analysis for ID 22051216393486404

conformational change will be analysed

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 3 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

WARNING: Rotation-translation modes have a cumulative overlap of 0.7040 !!! This probably means that the second conformation was not fitted properly onto the first one.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity cumulative overlap amplitude (dq)
mode 7 1.00 0.0242 0.019 6.5522
mode 8 1.11 0.4187 0.244 21.7873
mode 9 1.31 0.2599 0.276 -8.5638
mode 10 1.59 0.0670 0.282 1.5214
mode 11 1.64 0.0150 0.282 -2.2653
mode 12 1.77 0.0976 0.321 -8.9666
mode 13 1.90 0.3491 0.327 3.0159
mode 14 2.31 0.1223 0.372 -9.9836
mode 15 2.43 0.4768 0.385 5.8532
mode 16 2.64 0.4015 0.391 -1.0424
mode 17 2.76 0.4274 0.398 4.1206
mode 18 2.94 0.2419 0.404 -3.7970
mode 19 3.09 0.3405 0.411 3.3535
mode 20 3.19 0.3825 0.423 5.7994
mode 21 3.26 0.0656 0.423 -0.8202
mode 22 3.45 0.2249 0.423 -0.8505
mode 23 3.47 0.3370 0.443 5.9589
mode 24 3.58 0.1757 0.443 -2.2281
mode 25 3.68 0.1452 0.449 -2.2829
mode 26 3.75 0.1485 0.449 -0.7155
mode 27 3.87 0.0465 0.449 -2.2910
mode 28 3.96 0.4510 0.449 2.1102
mode 29 4.03 0.1676 0.455 -3.3594
mode 30 4.12 0.3225 0.462 -2.5203
mode 31 4.21 0.3279 0.475 -5.9629
mode 32 4.38 0.5269 0.481 2.4173
mode 33 4.57 0.4132 0.481 0.7625
mode 34 4.61 0.4565 0.481 2.5996
mode 35 4.71 0.3593 0.481 -1.2895
mode 36 4.78 0.3457 0.488 -2.9183
mode 37 4.79 0.1689 0.494 3.3804
mode 38 4.80 0.2904 0.494 0.9305
mode 39 4.98 0.2988 0.494 0.2616
mode 40 5.04 0.3528 0.494 1.3030
mode 41 5.12 0.3792 0.500 -2.6117
mode 42 5.22 0.2344 0.500 2.1779
mode 43 5.25 0.4300 0.507 3.1439
mode 44 5.32 0.2451 0.507 -2.7009
mode 45 5.36 0.2008 0.513 2.8736
mode 46 5.44 0.3013 0.513 -2.3529
mode 47 5.51 0.5634 0.513 1.3922
mode 48 5.61 0.2706 0.513 -1.0222
mode 49 5.64 0.3568 0.520 1.7577
mode 50 5.69 0.3834 0.539 7.1085
mode 51 5.73 0.3485 0.552 -4.3326
mode 52 5.80 0.1499 0.552 0.5708
mode 53 5.92 0.3435 0.558 3.5974
mode 54 6.00 0.5200 0.558 -2.3989
mode 55 6.04 0.3376 0.565 2.1220
mode 56 6.10 0.4528 0.565 -0.9056
mode 57 6.16 0.4182 0.565 1.0206
mode 58 6.22 0.4757 0.565 0.3097
mode 59 6.29 0.3920 0.597 8.5738
mode 60 6.35 0.3523 0.597 -0.7476
mode 61 6.38 0.3138 0.603 -2.2485
mode 62 6.42 0.3411 0.629 -7.6874
mode 63 6.56 0.3195 0.629 -0.1095
mode 64 6.59 0.2983 0.635 4.2149
mode 65 6.64 0.2736 0.635 -0.1479
mode 66 6.72 0.4512 0.635 -1.4007
mode 67 6.75 0.3929 0.635 -0.4249
mode 68 6.77 0.2888 0.642 1.8095
mode 69 6.84 0.0531 0.648 -3.9621
mode 70 6.91 0.0870 0.648 -1.8521
mode 71 6.96 0.2301 0.654 -3.0156
mode 72 6.98 0.3094 0.654 -3.2843
mode 73 7.07 0.2921 0.686 -7.8345
mode 74 7.12 0.1843 0.686 -1.9660
mode 75 7.16 0.5061 0.699 -5.3397
mode 76 7.25 0.3520 0.712 -5.1569
mode 77 7.27 0.4434 0.725 4.3293
mode 78 7.32 0.4228 0.738 -5.7970
mode 79 7.40 0.3885 0.744 4.1467
mode 80 7.44 0.3875 0.744 -0.5470
mode 81 7.45 0.3529 0.751 -1.1577
mode 82 7.50 0.4366 0.757 -3.6402
mode 83 7.59 0.3671 0.770 -5.6615
mode 84 7.61 0.4924 0.776 3.7224
mode 85 7.67 0.4633 0.776 1.4639
mode 86 7.70 0.4269 0.796 6.2091
mode 87 7.72 0.3901 0.802 4.0227
mode 88 7.74 0.4756 0.808 -2.4551
mode 89 7.77 0.4073 0.808 3.4946
mode 90 7.84 0.3843 0.808 -0.2015
mode 91 7.88 0.3141 0.815 -1.7072
mode 92 7.92 0.3667 0.815 2.3474
mode 93 7.95 0.4066 0.815 -1.5498
mode 94 8.00 0.3614 0.821 2.1667
mode 95 8.02 0.3730 0.821 0.0177
mode 96 8.12 0.3730 0.828 4.2098
mode 97 8.20 0.3670 0.828 -1.7931
mode 98 8.22 0.3444 0.828 -1.1278
mode 99 8.28 0.3586 0.828 -1.0065
mode 100 8.32 0.3040 0.834 3.2177
mode 101 8.39 0.3177 0.834 0.6835
mode 102 8.40 0.4179 0.834 -0.8580
mode 103 8.43 0.4786 0.834 0.5050
mode 104 8.52 0.4527 0.834 1.0716
mode 105 8.60 0.5235 0.834 -0.6187
mode 106 8.62 0.3278 0.834 0.6233

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.