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***  LoTPS3_NMA  ***

Normal Mode Analysis for ID 220512003914130743

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 2 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0594
mode 8 1.06 0.5638
mode 9 1.11 0.4598
mode 10 1.40 0.6248
mode 11 1.48 0.0900
mode 12 1.65 0.1332
mode 13 1.74 0.2275
mode 14 1.82 0.1473
mode 15 1.88 0.2500
mode 16 1.96 0.3645
mode 17 2.00 0.4827
mode 18 2.10 0.1943
mode 19 2.16 0.3788
mode 20 2.22 0.0731
mode 21 2.25 0.2010
mode 22 2.32 0.1011
mode 23 2.38 0.1378
mode 24 2.42 0.1336
mode 25 2.48 0.1803
mode 26 2.54 0.4146
mode 27 2.62 0.1952
mode 28 2.72 0.1537
mode 29 2.74 0.3267
mode 30 2.84 0.3870
mode 31 2.90 0.1098
mode 32 3.00 0.3525
mode 33 3.00 0.3238
mode 34 3.03 0.1470
mode 35 3.10 0.2163
mode 36 3.12 0.2393
mode 37 3.15 0.4229
mode 38 3.19 0.2832
mode 39 3.25 0.3568
mode 40 3.26 0.4147
mode 41 3.32 0.4576
mode 42 3.35 0.4099
mode 43 3.40 0.4411
mode 44 3.43 0.2761
mode 45 3.49 0.2922
mode 46 3.52 0.3814
mode 47 3.54 0.5463
mode 48 3.63 0.1705
mode 49 3.68 0.4792
mode 50 3.74 0.2536
mode 51 3.77 0.2226
mode 52 3.85 0.2780
mode 53 3.87 0.2444
mode 54 3.93 0.3543
mode 55 3.98 0.5528
mode 56 4.01 0.4853
mode 57 4.03 0.3501
mode 58 4.11 0.4242
mode 59 4.15 0.5119
mode 60 4.19 0.3894
mode 61 4.23 0.5318
mode 62 4.24 0.4749
mode 63 4.33 0.2283
mode 64 4.37 0.3670
mode 65 4.41 0.1222
mode 66 4.45 0.3295
mode 67 4.52 0.3424
mode 68 4.55 0.3781
mode 69 4.56 0.4215
mode 70 4.59 0.3427
mode 71 4.67 0.3032
mode 72 4.70 0.3420
mode 73 4.75 0.3556
mode 74 4.77 0.3558
mode 75 4.79 0.2763
mode 76 4.83 0.3176
mode 77 4.84 0.3503
mode 78 4.87 0.4073
mode 79 4.90 0.2179
mode 80 4.94 0.3511
mode 81 4.97 0.3299
mode 82 4.98 0.3787
mode 83 5.03 0.4041
mode 84 5.05 0.3876
mode 85 5.10 0.3726
mode 86 5.12 0.4156
mode 87 5.13 0.3596
mode 88 5.19 0.3741
mode 89 5.23 0.4382
mode 90 5.26 0.3869
mode 91 5.28 0.4352
mode 92 5.29 0.5098
mode 93 5.33 0.1732
mode 94 5.34 0.2960
mode 95 5.38 0.2274
mode 96 5.40 0.4312
mode 97 5.43 0.4007
mode 98 5.45 0.4143
mode 99 5.50 0.4318
mode 100 5.52 0.3725
mode 101 5.56 0.4410
mode 102 5.60 0.4280
mode 103 5.62 0.4412
mode 104 5.64 0.4540
mode 105 5.67 0.4680
mode 106 5.71 0.3936

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.