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***  3KYL  ***

Normal Mode Analysis for ID 220404205218136699

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 1 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.5265
mode 8 1.16 0.0399
mode 9 1.30 0.5824
mode 10 1.62 0.5714
mode 11 1.97 0.6040
mode 12 2.07 0.6762
mode 13 2.24 0.5143
mode 14 2.36 0.5804
mode 15 2.41 0.2126
mode 16 2.68 0.7157
mode 17 2.86 0.5366
mode 18 3.09 0.7295
mode 19 3.30 0.5310
mode 20 3.45 0.3305
mode 21 3.60 0.2365
mode 22 3.66 0.4326
mode 23 3.76 0.2677
mode 24 3.90 0.5398
mode 25 3.92 0.4981
mode 26 4.08 0.3843
mode 27 4.17 0.3392
mode 28 4.30 0.3891
mode 29 4.38 0.5253
mode 30 4.40 0.4384
mode 31 4.54 0.4987
mode 32 4.59 0.5313
mode 33 4.78 0.5687
mode 34 4.84 0.4033
mode 35 4.97 0.3468
mode 36 5.09 0.2922
mode 37 5.19 0.2757
mode 38 5.29 0.4246
mode 39 5.37 0.4939
mode 40 5.38 0.3415
mode 41 5.49 0.4778
mode 42 5.59 0.3492
mode 43 5.68 0.4257
mode 44 5.80 0.3273
mode 45 5.87 0.3864
mode 46 5.97 0.3768
mode 47 5.98 0.2899
mode 48 6.08 0.3120
mode 49 6.15 0.3908
mode 50 6.20 0.2406
mode 51 6.23 0.3191
mode 52 6.27 0.5159
mode 53 6.36 0.4411
mode 54 6.49 0.3849
mode 55 6.51 0.5417
mode 56 6.53 0.3828
mode 57 6.68 0.4253
mode 58 6.73 0.3895
mode 59 6.83 0.3570
mode 60 6.85 0.3693
mode 61 6.86 0.5203
mode 62 6.90 0.4448
mode 63 7.00 0.4966
mode 64 7.08 0.5744
mode 65 7.22 0.6016
mode 66 7.23 0.4756
mode 67 7.31 0.4504
mode 68 7.38 0.2675
mode 69 7.41 0.5237
mode 70 7.47 0.4478
mode 71 7.50 0.4951
mode 72 7.52 0.3287
mode 73 7.56 0.4803
mode 74 7.67 0.5706
mode 75 7.71 0.4443
mode 76 7.76 0.4295
mode 77 7.79 0.1092
mode 78 7.83 0.4024
mode 79 7.90 0.3229
mode 80 7.94 0.5224
mode 81 7.96 0.5398
mode 82 8.00 0.4141
mode 83 8.07 0.4782
mode 84 8.12 0.4394
mode 85 8.16 0.5284
mode 86 8.24 0.4631
mode 87 8.27 0.5638
mode 88 8.28 0.3687
mode 89 8.35 0.4316
mode 90 8.38 0.4759
mode 91 8.44 0.5119
mode 92 8.48 0.5428
mode 93 8.50 0.5575
mode 94 8.54 0.5088
mode 95 8.55 0.5387
mode 96 8.66 0.4585
mode 97 8.69 0.5513
mode 98 8.71 0.5054
mode 99 8.80 0.4608
mode 100 8.86 0.4915
mode 101 8.90 0.5968
mode 102 8.95 0.4320
mode 103 8.98 0.4803
mode 104 9.01 0.5117
mode 105 9.05 0.4857
mode 106 9.07 0.3576

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.