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***  HYDROLASE 11-MAR-15 4YO9  ***

Normal Mode Analysis for ID 22032618020769270

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 1 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.3314
mode 8 1.06 0.0726
mode 9 1.26 0.6196
mode 10 1.32 0.4931
mode 11 1.35 0.4452
mode 12 1.40 0.3966
mode 13 1.64 0.3545
mode 14 1.69 0.4508
mode 15 1.95 0.4963
mode 16 2.04 0.5692
mode 17 2.12 0.0082
mode 18 2.29 0.1620
mode 19 2.48 0.7449
mode 20 2.62 0.5359
mode 21 2.76 0.5756
mode 22 2.82 0.4765
mode 23 2.83 0.5770
mode 24 2.92 0.2738
mode 25 3.03 0.4650
mode 26 3.04 0.3585
mode 27 3.12 0.4110
mode 28 3.28 0.5389
mode 29 3.50 0.2784
mode 30 3.57 0.2212
mode 31 3.67 0.2119
mode 32 3.85 0.3763
mode 33 3.92 0.4848
mode 34 4.35 0.2607
mode 35 4.39 0.2847
mode 36 4.49 0.2497
mode 37 4.60 0.2185
mode 38 4.61 0.2922
mode 39 4.62 0.3292
mode 40 4.70 0.3676
mode 41 4.76 0.3232
mode 42 4.87 0.4408
mode 43 4.90 0.3716
mode 44 4.97 0.3967
mode 45 5.05 0.3011
mode 46 5.08 0.2689
mode 47 5.12 0.2963
mode 48 5.14 0.4920
mode 49 5.21 0.3740
mode 50 5.22 0.3706
mode 51 5.31 0.2831
mode 52 5.33 0.2997
mode 53 5.38 0.4655
mode 54 5.52 0.4203
mode 55 5.56 0.3720
mode 56 5.61 0.3914
mode 57 5.69 0.4261
mode 58 5.74 0.3678
mode 59 5.77 0.4185
mode 60 5.80 0.3053
mode 61 5.84 0.3444
mode 62 5.89 0.4427
mode 63 5.93 0.4719
mode 64 6.02 0.4548
mode 65 6.09 0.3560
mode 66 6.10 0.5170
mode 67 6.18 0.4291
mode 68 6.20 0.2406
mode 69 6.22 0.4780
mode 70 6.26 0.4542
mode 71 6.32 0.5258
mode 72 6.36 0.4275
mode 73 6.41 0.3375
mode 74 6.45 0.4775
mode 75 6.48 0.4383
mode 76 6.50 0.4352
mode 77 6.54 0.4543
mode 78 6.56 0.4342
mode 79 6.60 0.3941
mode 80 6.62 0.4116
mode 81 6.70 0.4533
mode 82 6.76 0.5129
mode 83 6.77 0.4760
mode 84 6.79 0.5661
mode 85 6.84 0.4750
mode 86 6.86 0.5428
mode 87 6.87 0.4867
mode 88 6.89 0.5110
mode 89 6.98 0.5860
mode 90 6.99 0.4297
mode 91 7.01 0.4238
mode 92 7.07 0.4099
mode 93 7.10 0.4277
mode 94 7.13 0.5731
mode 95 7.17 0.4294
mode 96 7.18 0.4602
mode 97 7.21 0.5289
mode 98 7.26 0.3738
mode 99 7.27 0.3483
mode 100 7.29 0.2501
mode 101 7.30 0.4364
mode 102 7.37 0.5272
mode 103 7.41 0.3555
mode 104 7.43 0.2646
mode 105 7.48 0.3854
mode 106 7.51 0.4518

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.