CNRS Nantes University UFIP UFIP
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.


***  hbv_contextfold  ***

Normal Mode Analysis for ID 22022818111249475

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.6666
mode 8 1.24 0.5837
mode 9 1.60 0.2914
mode 10 1.87 0.4418
mode 11 2.29 0.5047
mode 12 2.72 0.5756
mode 13 3.19 0.7759
mode 14 3.51 0.8559
mode 15 3.82 0.5280
mode 16 4.84 0.5734
mode 17 5.37 0.1102
mode 18 6.24 0.5761
mode 19 6.43 0.6438
mode 20 6.68 0.5961
mode 21 7.78 0.6910
mode 22 8.43 0.6401
mode 23 8.71 0.4244
mode 24 9.65 0.5166
mode 25 9.96 0.6604
mode 26 10.66 0.5217
mode 27 11.10 0.6699
mode 28 11.69 0.6927
mode 29 11.97 0.5638
mode 30 12.65 0.5474
mode 31 13.29 0.5861
mode 32 13.78 0.5299
mode 33 14.26 0.4924
mode 34 14.43 0.5286
mode 35 14.67 0.4872
mode 36 15.07 0.5641
mode 37 15.52 0.4969
mode 38 15.80 0.5599
mode 39 16.23 0.2030
mode 40 16.65 0.4930
mode 41 17.05 0.3975
mode 42 17.31 0.5652
mode 43 17.64 0.3889
mode 44 18.21 0.5771
mode 45 18.67 0.5175
mode 46 18.83 0.3256
mode 47 18.99 0.4797
mode 48 19.15 0.4738
mode 49 19.34 0.5046
mode 50 19.66 0.6723
mode 51 20.05 0.4888
mode 52 20.48 0.4623
mode 53 20.99 0.2542
mode 54 21.36 0.2374
mode 55 21.46 0.5334
mode 56 21.79 0.5724
mode 57 21.95 0.5026
mode 58 22.21 0.5949
mode 59 22.35 0.4693
mode 60 22.71 0.4010
mode 61 23.01 0.5877
mode 62 23.09 0.4705
mode 63 23.25 0.3977
mode 64 23.75 0.3277
mode 65 24.00 0.3385
mode 66 24.22 0.5902
mode 67 24.32 0.5216
mode 68 24.66 0.3399
mode 69 24.89 0.5222
mode 70 24.99 0.5115
mode 71 25.28 0.5480
mode 72 25.56 0.4455
mode 73 25.64 0.6085
mode 74 25.91 0.4979
mode 75 26.22 0.2740
mode 76 26.38 0.5027
mode 77 26.50 0.4831
mode 78 26.81 0.5641
mode 79 27.14 0.5246
mode 80 27.45 0.4946
mode 81 27.55 0.3618
mode 82 27.86 0.4850
mode 83 27.94 0.5467
mode 84 28.20 0.6000
mode 85 28.40 0.4021
mode 86 28.67 0.4298
mode 87 28.94 0.4665
mode 88 29.16 0.4902
mode 89 29.52 0.5855
mode 90 29.64 0.5765
mode 91 29.99 0.3459
mode 92 30.15 0.3325
mode 93 30.49 0.4021
mode 94 30.62 0.6128
mode 95 30.68 0.5810
mode 96 31.12 0.6044
mode 97 31.28 0.4558
mode 98 31.53 0.6952
mode 99 31.77 0.6202
mode 100 31.95 0.4031
mode 101 32.33 0.2583
mode 102 32.65 0.5612
mode 103 32.73 0.5725
mode 104 32.92 0.5987
mode 105 33.06 0.5358
mode 106 33.37 0.2072

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.