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***  HORMONE RECEPTOR, SIGNALING PROTEIN 02-OCT-09 3K3K  ***

Normal Mode Analysis for ID 22022810242374253

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 1 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0420
mode 8 1.12 0.1108
mode 9 1.22 0.1390
mode 10 1.27 0.2490
mode 11 1.38 0.1508
mode 12 1.40 0.2068
mode 13 1.47 0.3302
mode 14 1.64 0.2523
mode 15 1.77 0.0492
mode 16 1.83 0.1293
mode 17 1.88 0.1355
mode 18 1.93 0.3081
mode 19 2.00 0.1632
mode 20 2.04 0.3789
mode 21 2.10 0.2763
mode 22 2.25 0.2503
mode 23 2.31 0.1686
mode 24 2.34 0.1456
mode 25 2.38 0.6383
mode 26 2.43 0.2645
mode 27 2.50 0.3232
mode 28 2.54 0.2344
mode 29 2.57 0.2470
mode 30 2.64 0.3631
mode 31 2.69 0.3179
mode 32 2.74 0.2850
mode 33 2.78 0.5201
mode 34 2.82 0.3682
mode 35 2.87 0.3138
mode 36 2.91 0.1616
mode 37 2.98 0.3677
mode 38 3.02 0.2778
mode 39 3.05 0.1908
mode 40 3.08 0.1586
mode 41 3.12 0.3161
mode 42 3.19 0.1816
mode 43 3.26 0.3683
mode 44 3.27 0.2325
mode 45 3.34 0.1977
mode 46 3.39 0.1921
mode 47 3.40 0.1345
mode 48 3.45 0.3345
mode 49 3.48 0.3246
mode 50 3.56 0.4601
mode 51 3.59 0.2829
mode 52 3.67 0.4848
mode 53 3.68 0.5277
mode 54 3.72 0.4823
mode 55 3.75 0.5354
mode 56 3.84 0.3647
mode 57 3.89 0.4081
mode 58 3.94 0.3609
mode 59 3.94 0.4136
mode 60 3.96 0.5317
mode 61 4.01 0.2774
mode 62 4.07 0.1588
mode 63 4.13 0.2368
mode 64 4.15 0.3247
mode 65 4.18 0.2630
mode 66 4.19 0.4879
mode 67 4.24 0.0753
mode 68 4.25 0.1976
mode 69 4.29 0.4857
mode 70 4.31 0.4351
mode 71 4.37 0.1620
mode 72 4.43 0.2953
mode 73 4.45 0.3888
mode 74 4.45 0.1347
mode 75 4.48 0.4588
mode 76 4.51 0.4150
mode 77 4.57 0.4875
mode 78 4.61 0.4581
mode 79 4.64 0.4321
mode 80 4.67 0.4972
mode 81 4.69 0.4151
mode 82 4.72 0.4193
mode 83 4.79 0.4698
mode 84 4.83 0.4364
mode 85 4.84 0.3904
mode 86 4.86 0.4712
mode 87 4.88 0.3943
mode 88 4.90 0.4748
mode 89 4.94 0.4448
mode 90 4.95 0.4403
mode 91 4.98 0.3502
mode 92 5.01 0.2784
mode 93 5.04 0.4577
mode 94 5.05 0.2666
mode 95 5.06 0.0991
mode 96 5.10 0.2206
mode 97 5.12 0.2568
mode 98 5.14 0.0921
mode 99 5.17 0.3102
mode 100 5.18 0.1835
mode 101 5.19 0.3142
mode 102 5.21 0.3061
mode 103 5.23 0.3360
mode 104 5.25 0.4254
mode 105 5.27 0.4259
mode 106 5.30 0.2244

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.