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Normal Mode Analysis for ID 220120213306123572

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 5 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0163
mode 8 1.07 0.0088
mode 9 1.11 0.0175
mode 10 1.14 0.0167
mode 11 1.18 0.0124
mode 12 1.27 0.0079
mode 13 1.28 0.0084
mode 14 1.31 0.0223
mode 15 1.37 0.0081
mode 16 1.41 0.0187
mode 17 1.42 0.0154
mode 18 1.46 0.0155
mode 19 1.48 0.0155
mode 20 1.51 0.2795
mode 21 1.52 0.0138
mode 22 1.57 0.0104
mode 23 1.58 0.0123
mode 24 1.60 0.0077
mode 25 1.63 0.0079
mode 26 1.64 0.3378
mode 27 1.67 0.0077
mode 28 1.70 0.0133
mode 29 1.73 0.0139
mode 30 1.75 0.0083
mode 31 1.78 0.0090
mode 32 1.81 0.0172
mode 33 1.87 0.0936
mode 34 1.88 0.0119
mode 35 1.93 0.0149
mode 36 1.95 0.1791
mode 37 1.97 0.0231
mode 38 1.99 0.1440
mode 39 2.01 0.0090
mode 40 2.03 0.0432
mode 41 2.04 0.0691
mode 42 2.07 0.1320
mode 43 2.08 0.0050
mode 44 2.08 0.0091
mode 45 2.11 0.0050
mode 46 2.12 0.0055
mode 47 2.13 0.0120
mode 48 2.14 0.0685
mode 49 2.16 0.0389
mode 50 2.18 0.0315
mode 51 2.19 0.0533
mode 52 2.21 0.0525
mode 53 2.22 0.0543
mode 54 2.23 0.0994
mode 55 2.25 0.0352
mode 56 2.28 0.0158
mode 57 2.29 0.1037
mode 58 2.30 0.0166
mode 59 2.31 0.1220
mode 60 2.32 0.0990
mode 61 2.33 0.0617
mode 62 2.34 0.0271
mode 63 2.35 0.0358
mode 64 2.36 0.0610
mode 65 2.37 0.0147
mode 66 2.38 0.0739
mode 67 2.39 0.1251
mode 68 2.40 0.0699
mode 69 2.40 0.0232
mode 70 2.40 0.0745
mode 71 2.42 0.0821
mode 72 2.43 0.0927
mode 73 2.43 0.0457
mode 74 2.44 0.0423
mode 75 2.45 0.0383
mode 76 2.45 0.0495
mode 77 2.46 0.0715
mode 78 2.46 0.0816
mode 79 2.46 0.1467
mode 80 2.47 0.0539
mode 81 2.48 0.0977
mode 82 2.49 0.1081
mode 83 2.50 0.1392
mode 84 2.51 0.0432
mode 85 2.52 0.0941
mode 86 2.53 0.0488
mode 87 2.53 0.0937
mode 88 2.54 0.0809
mode 89 2.54 0.0175
mode 90 2.55 0.0576
mode 91 2.55 0.0723
mode 92 2.55 0.0656
mode 93 2.56 0.1198
mode 94 2.57 0.0790
mode 95 2.58 0.0201
mode 96 2.58 0.0546
mode 97 2.59 0.0852
mode 98 2.59 0.0461
mode 99 2.60 0.0867
mode 100 2.61 0.0980
mode 101 2.61 0.0131
mode 102 2.62 0.0230
mode 103 2.62 0.1641
mode 104 2.62 0.0704
mode 105 2.63 0.1583
mode 106 2.63 0.0650

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.