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***  LIGASE 27-MAY-17 5XOB  ***

Normal Mode Analysis for ID 220114105920126917

conformational change will be analysed

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 1 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity cumulative overlap amplitude (dq)
mode 7 1.00 0.3469 nan 0.0000
mode 8 1.30 0.2759 nan 0.0000
mode 9 2.28 0.0827 nan 0.0000
mode 10 4.02 0.4194 nan 0.0000
mode 11 5.25 0.3479 nan 0.0000
mode 12 6.07 0.4304 nan 0.0000
mode 13 6.56 0.6230 nan 0.0000
mode 14 8.12 0.1602 nan 0.0000
mode 15 9.00 0.4837 nan 0.0000
mode 16 9.62 0.0942 nan 0.0000
mode 17 10.12 0.5419 nan 0.0000
mode 18 11.73 0.6427 nan 0.0000
mode 19 11.95 0.6683 nan 0.0000
mode 20 12.42 0.2279 nan 0.0000
mode 21 12.89 0.2376 nan 0.0000
mode 22 13.04 0.1625 nan 0.0000
mode 23 14.23 0.6661 nan 0.0000
mode 24 14.52 0.4087 nan 0.0000
mode 25 15.41 0.5497 nan 0.0000
mode 26 15.93 0.1569 nan 0.0000
mode 27 16.21 0.5980 nan 0.0000
mode 28 16.75 0.3418 nan 0.0000
mode 29 16.90 0.2973 nan 0.0000
mode 30 17.28 0.5066 nan 0.0000
mode 31 17.57 0.4500 nan 0.0000
mode 32 18.29 0.4509 nan 0.0000
mode 33 18.72 0.4719 nan 0.0000
mode 34 19.04 0.4269 nan 0.0000
mode 35 19.53 0.3465 nan 0.0000
mode 36 19.59 0.3853 nan 0.0000
mode 37 20.32 0.5166 nan 0.0000
mode 38 20.64 0.3914 nan 0.0000
mode 39 20.89 0.4126 nan 0.0000
mode 40 21.06 0.3471 nan 0.0000
mode 41 21.30 0.2606 nan 0.0000
mode 42 21.72 0.1575 nan 0.0000
mode 43 21.96 0.3185 nan 0.0000
mode 44 22.51 0.3977 nan 0.0000
mode 45 22.66 0.3634 nan 0.0000
mode 46 23.09 0.3844 nan 0.0000
mode 47 23.40 0.4432 nan 0.0000
mode 48 23.65 0.3960 nan 0.0000
mode 49 24.20 0.5844 nan 0.0000
mode 50 24.35 0.4809 nan 0.0000
mode 51 24.52 0.5388 nan 0.0000
mode 52 24.85 0.3950 nan 0.0000
mode 53 25.09 0.4851 nan 0.0000
mode 54 25.62 0.6082 nan 0.0000
mode 55 25.76 0.4511 nan 0.0000
mode 56 25.99 0.5078 nan 0.0000
mode 57 26.26 0.2262 nan 0.0000
mode 58 26.38 0.4164 nan 0.0000
mode 59 26.53 0.3720 nan 0.0000
mode 60 26.85 0.5155 nan 0.0000
mode 61 27.25 0.2611 nan 0.0000
mode 62 27.50 0.5117 nan 0.0000
mode 63 27.64 0.4839 nan 0.0000
mode 64 27.86 0.4746 nan 0.0000
mode 65 28.13 0.3768 nan 0.0000
mode 66 28.25 0.2332 nan 0.0000
mode 67 28.40 0.4703 nan 0.0000
mode 68 28.61 0.5475 nan 0.0000
mode 69 28.76 0.4952 nan 0.0000
mode 70 28.89 0.3210 nan 0.0000
mode 71 29.06 0.4776 nan 0.0000
mode 72 29.34 0.5663 nan 0.0000
mode 73 29.50 0.3243 nan 0.0000
mode 74 29.63 0.3755 nan 0.0000
mode 75 29.85 0.4511 nan 0.0000
mode 76 30.06 0.3721 nan 0.0000
mode 77 30.20 0.5574 nan 0.0000
mode 78 30.37 0.4106 nan 0.0000
mode 79 30.65 0.3689 nan 0.0000
mode 80 31.09 0.3909 nan 0.0000
mode 81 31.23 0.3114 nan 0.0000
mode 82 31.55 0.4062 nan 0.0000
mode 83 31.67 0.3964 nan 0.0000
mode 84 31.78 0.4745 nan 0.0000
mode 85 32.00 0.4437 nan 0.0000
mode 86 32.08 0.3331 nan 0.0000
mode 87 32.18 0.4921 nan 0.0000
mode 88 32.40 0.4803 nan 0.0000
mode 89 32.70 0.4739 nan 0.0000
mode 90 32.84 0.4520 nan 0.0000
mode 91 32.93 0.3383 nan 0.0000
mode 92 33.18 0.4746 nan 0.0000
mode 93 33.30 0.0967 nan 0.0000
mode 94 33.36 0.4656 nan 0.0000
mode 95 33.72 0.3227 nan 0.0000
mode 96 33.77 0.4826 nan 0.0000
mode 97 33.91 0.0581 nan 0.0000
mode 98 34.14 0.5032 nan 0.0000
mode 99 34.29 0.4455 nan 0.0000
mode 100 34.38 0.4447 nan 0.0000
mode 101 34.57 0.4146 nan 0.0000
mode 102 34.61 0.5580 nan 0.0000
mode 103 34.80 0.5278 nan 0.0000
mode 104 34.94 0.3817 nan 0.0000
mode 105 35.14 0.4208 nan 0.0000
mode 106 35.43 0.4535 nan 0.0000

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.