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***  Protein_Nesrin  ***

Normal Mode Analysis for ID 22010417330344126

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 3 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0707
mode 8 1.32 0.0812
mode 9 1.69 0.0874
mode 10 2.10 0.1151
mode 11 2.29 0.2569
mode 12 2.50 0.0852
mode 13 2.58 0.1378
mode 14 2.82 0.2959
mode 15 3.24 0.1358
mode 16 3.53 0.1078
mode 17 3.68 0.1262
mode 18 3.90 0.1193
mode 19 4.03 0.1311
mode 20 4.28 0.2183
mode 21 4.47 0.0479
mode 22 4.65 0.0383
mode 23 5.29 0.1517
mode 24 5.55 0.1211
mode 25 5.90 0.1908
mode 26 5.95 0.2238
mode 27 6.46 0.1996
mode 28 6.68 0.2086
mode 29 6.94 0.2081
mode 30 7.22 0.0584
mode 31 7.42 0.2378
mode 32 7.62 0.0188
mode 33 7.80 0.2467
mode 34 8.27 0.1034
mode 35 8.42 0.2844
mode 36 9.01 0.1222
mode 37 9.32 0.2111
mode 38 9.70 0.2258
mode 39 10.03 0.2245
mode 40 10.40 0.3605
mode 41 10.50 0.3041
mode 42 11.15 0.2816
mode 43 11.50 0.3521
mode 44 12.00 0.1911
mode 45 12.25 0.2446
mode 46 12.56 0.1947
mode 47 13.02 0.2169
mode 48 13.43 0.2684
mode 49 13.69 0.1642
mode 50 14.26 0.1031
mode 51 14.53 0.0976
mode 52 14.83 0.2563
mode 53 15.28 0.1696
mode 54 15.94 0.1585
mode 55 16.00 0.1484
mode 56 16.46 0.1952
mode 57 16.55 0.0352
mode 58 16.66 0.1191
mode 59 16.88 0.1362
mode 60 17.35 0.1346
mode 61 17.97 0.1874
mode 62 18.17 0.1020
mode 63 18.63 0.1839
mode 64 18.91 0.1511
mode 65 19.33 0.2150
mode 66 19.69 0.1468
mode 67 19.82 0.1361
mode 68 20.32 0.0352
mode 69 20.45 0.2304
mode 70 20.79 0.0388
mode 71 20.88 0.0435
mode 72 21.43 0.0685
mode 73 21.67 0.2036
mode 74 22.43 0.2494
mode 75 22.52 0.2265
mode 76 22.69 0.1772
mode 77 23.67 0.1274
mode 78 24.11 0.2075
mode 79 24.86 0.1276
mode 80 25.06 0.2166
mode 81 25.41 0.2328
mode 82 25.90 0.1568
mode 83 26.10 0.1730
mode 84 26.56 0.2379
mode 85 26.96 0.0872
mode 86 27.58 0.2015
mode 87 28.14 0.0997
mode 88 28.24 0.0933
mode 89 28.83 0.1359
mode 90 29.52 0.0694
mode 91 29.61 0.1416
mode 92 30.18 0.2193
mode 93 30.91 0.1679
mode 94 31.30 0.1020
mode 95 31.99 0.1394
mode 96 32.64 0.1140
mode 97 33.46 0.0939
mode 98 34.12 0.1059
mode 99 34.28 0.1095
mode 100 34.67 0.2541
mode 101 34.76 0.0588
mode 102 35.12 0.1757
mode 103 35.57 0.1089
mode 104 35.98 0.0978
mode 105 36.51 0.2354
mode 106 37.23 0.0677

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.