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Normal Mode Analysis for ID 21081821424089196

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 5 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0021
mode 8 1.18 0.0022
mode 9 1.24 0.0022
mode 10 1.67 0.0034
mode 11 1.84 0.0044
mode 12 1.92 0.0026
mode 13 1.99 0.0057
mode 14 2.15 0.0222
mode 15 2.16 0.0116
mode 16 2.18 0.0133
mode 17 2.28 0.0072
mode 18 2.33 0.0033
mode 19 2.39 0.0320
mode 20 2.42 0.0065
mode 21 2.46 0.0767
mode 22 2.51 0.0364
mode 23 2.56 0.0194
mode 24 2.58 0.0441
mode 25 2.64 0.0799
mode 26 2.69 0.0338
mode 27 2.71 0.0506
mode 28 2.78 0.0168
mode 29 2.91 0.0067
mode 30 2.99 0.0399
mode 31 3.11 0.1330
mode 32 3.18 0.1422
mode 33 3.27 0.0946
mode 34 3.46 0.0473
mode 35 3.50 0.0508
mode 36 3.58 0.0285
mode 37 3.62 0.0754
mode 38 3.65 0.0438
mode 39 3.72 0.0385
mode 40 3.82 0.2094
mode 41 3.89 0.1438
mode 42 4.03 0.2128
mode 43 4.17 0.1153
mode 44 4.22 0.1360
mode 45 4.27 0.1905
mode 46 4.32 0.0985
mode 47 4.38 0.0972
mode 48 4.47 0.0992
mode 49 4.51 0.1627
mode 50 4.53 0.3349
mode 51 4.62 0.1604
mode 52 4.73 0.0996
mode 53 4.84 0.0614
mode 54 4.88 0.2166
mode 55 4.97 0.1597
mode 56 5.01 0.0368
mode 57 5.02 0.1816
mode 58 5.13 0.3593
mode 59 5.16 0.0786
mode 60 5.19 0.2498
mode 61 5.28 0.2019
mode 62 5.32 0.0178
mode 63 5.42 0.1216
mode 64 5.45 0.0991
mode 65 5.56 0.0137
mode 66 5.61 0.1675
mode 67 5.66 0.0377
mode 68 5.68 0.1355
mode 69 5.82 0.4383
mode 70 5.84 0.1959
mode 71 5.92 0.4312
mode 72 6.01 0.4331
mode 73 6.03 0.2826
mode 74 6.14 0.2024
mode 75 6.19 0.2976
mode 76 6.23 0.4127
mode 77 6.27 0.3236
mode 78 6.35 0.2878
mode 79 6.46 0.2982
mode 80 6.48 0.3609
mode 81 6.56 0.2526
mode 82 6.61 0.2773
mode 83 6.63 0.3145
mode 84 6.78 0.3419
mode 85 6.78 0.3490
mode 86 6.84 0.2694
mode 87 6.94 0.1361
mode 88 6.98 0.2627
mode 89 7.07 0.1961
mode 90 7.09 0.2334
mode 91 7.11 0.1054
mode 92 7.17 0.2575
mode 93 7.26 0.2114
mode 94 7.32 0.2392
mode 95 7.36 0.2812
mode 96 7.43 0.3400
mode 97 7.52 0.0219
mode 98 7.53 0.2752
mode 99 7.56 0.4344
mode 100 7.59 0.3037
mode 101 7.65 0.1896
mode 102 7.71 0.4365
mode 103 7.73 0.2230
mode 104 7.79 0.3420
mode 105 7.86 0.3521
mode 106 7.93 0.2658

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.