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***  kgf  ***

Normal Mode Analysis for ID 21080515293912683

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 2 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0087
mode 8 1.29 0.0508
mode 9 1.39 0.2456
mode 10 1.58 0.4707
mode 11 1.79 0.2563
mode 12 1.87 0.2993
mode 13 2.03 0.1810
mode 14 2.07 0.2604
mode 15 2.16 0.2428
mode 16 2.18 0.2913
mode 17 2.23 0.0820
mode 18 2.29 0.0961
mode 19 2.33 0.2697
mode 20 2.37 0.1128
mode 21 2.43 0.1588
mode 22 2.52 0.3689
mode 23 2.53 0.2573
mode 24 2.63 0.3072
mode 25 2.66 0.4150
mode 26 2.68 0.2629
mode 27 2.71 0.2809
mode 28 2.75 0.4341
mode 29 2.79 0.2707
mode 30 2.85 0.4671
mode 31 2.89 0.4279
mode 32 2.95 0.3615
mode 33 2.97 0.5161
mode 34 3.05 0.3924
mode 35 3.07 0.4387
mode 36 3.09 0.3804
mode 37 3.13 0.4853
mode 38 3.22 0.1987
mode 39 3.24 0.1313
mode 40 3.29 0.2543
mode 41 3.33 0.2916
mode 42 3.39 0.2484
mode 43 3.43 0.1903
mode 44 3.45 0.2679
mode 45 3.49 0.1309
mode 46 3.56 0.2405
mode 47 3.58 0.2627
mode 48 3.60 0.2042
mode 49 3.62 0.2374
mode 50 3.67 0.2087
mode 51 3.72 0.2572
mode 52 3.75 0.2621
mode 53 3.79 0.3372
mode 54 3.81 0.5021
mode 55 3.83 0.2284
mode 56 3.89 0.0914
mode 57 3.90 0.3783
mode 58 3.93 0.4476
mode 59 4.00 0.4185
mode 60 4.02 0.4053
mode 61 4.06 0.3542
mode 62 4.08 0.2891
mode 63 4.11 0.2690
mode 64 4.13 0.3346
mode 65 4.15 0.3338
mode 66 4.17 0.2675
mode 67 4.19 0.1901
mode 68 4.21 0.2351
mode 69 4.22 0.2025
mode 70 4.24 0.4391
mode 71 4.28 0.2746
mode 72 4.31 0.4136
mode 73 4.32 0.4038
mode 74 4.34 0.2126
mode 75 4.37 0.3641
mode 76 4.38 0.3761
mode 77 4.40 0.1508
mode 78 4.42 0.3706
mode 79 4.47 0.2969
mode 80 4.50 0.4056
mode 81 4.51 0.2924
mode 82 4.53 0.3434
mode 83 4.56 0.2742
mode 84 4.59 0.3703
mode 85 4.62 0.3670
mode 86 4.65 0.2678
mode 87 4.66 0.4393
mode 88 4.68 0.4177
mode 89 4.70 0.4724
mode 90 4.73 0.3233
mode 91 4.77 0.3493
mode 92 4.82 0.3804
mode 93 4.85 0.3739
mode 94 4.87 0.4008
mode 95 4.92 0.3975
mode 96 4.96 0.4431
mode 97 4.99 0.3100
mode 98 4.99 0.3550
mode 99 5.02 0.3983
mode 100 5.04 0.3703
mode 101 5.06 0.3784
mode 102 5.09 0.4118
mode 103 5.11 0.2995
mode 104 5.14 0.3463
mode 105 5.15 0.4289
mode 106 5.17 0.3891

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.