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***  6B73.S67A.SM  ***

Normal Mode Analysis for ID 2107200958301945

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 3 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0163
mode 8 1.55 0.0964
mode 9 1.58 0.0254
mode 10 1.68 0.1026
mode 11 1.83 0.2438
mode 12 1.93 0.0580
mode 13 2.46 0.4858
mode 14 2.56 0.3797
mode 15 2.86 0.1770
mode 16 2.89 0.2049
mode 17 3.23 0.2297
mode 18 3.36 0.0485
mode 19 3.40 0.1415
mode 20 3.55 0.2449
mode 21 3.64 0.3663
mode 22 3.82 0.4862
mode 23 3.90 0.3907
mode 24 4.18 0.3977
mode 25 4.21 0.3198
mode 26 4.47 0.1656
mode 27 4.53 0.3665
mode 28 4.63 0.1108
mode 29 4.71 0.3777
mode 30 4.87 0.4511
mode 31 5.01 0.4510
mode 32 5.09 0.4436
mode 33 5.20 0.4333
mode 34 5.34 0.4300
mode 35 5.45 0.4961
mode 36 5.55 0.2938
mode 37 5.65 0.4545
mode 38 5.76 0.2879
mode 39 5.83 0.4621
mode 40 5.96 0.1398
mode 41 6.02 0.3783
mode 42 6.14 0.4738
mode 43 6.25 0.4399
mode 44 6.34 0.3545
mode 45 6.37 0.2218
mode 46 6.49 0.3162
mode 47 6.63 0.5268
mode 48 6.69 0.3820
mode 49 6.74 0.4055
mode 50 6.84 0.2960
mode 51 6.97 0.1107
mode 52 7.04 0.2650
mode 53 7.05 0.3596
mode 54 7.09 0.5031
mode 55 7.22 0.3181
mode 56 7.31 0.4139
mode 57 7.47 0.4332
mode 58 7.50 0.1853
mode 59 7.54 0.6554
mode 60 7.63 0.4088
mode 61 7.74 0.4342
mode 62 7.88 0.4813
mode 63 7.95 0.4798
mode 64 8.05 0.5172
mode 65 8.16 0.4487
mode 66 8.23 0.2349
mode 67 8.30 0.3982
mode 68 8.41 0.5577
mode 69 8.47 0.3367
mode 70 8.59 0.3978
mode 71 8.66 0.4194
mode 72 8.69 0.4754
mode 73 8.77 0.3002
mode 74 8.80 0.4699
mode 75 8.88 0.1717
mode 76 8.94 0.0105
mode 77 9.05 0.2979
mode 78 9.18 0.3148
mode 79 9.24 0.4932
mode 80 9.32 0.3925
mode 81 9.33 0.3439
mode 82 9.41 0.5270
mode 83 9.43 0.4029
mode 84 9.60 0.5109
mode 85 9.60 0.3244
mode 86 9.67 0.2843
mode 87 9.75 0.1255
mode 88 9.79 0.2742
mode 89 9.81 0.2755
mode 90 9.91 0.3710
mode 91 9.98 0.5446
mode 92 10.06 0.4899
mode 93 10.15 0.3930
mode 94 10.19 0.3375
mode 95 10.24 0.2955
mode 96 10.28 0.4564
mode 97 10.39 0.4939
mode 98 10.54 0.4552
mode 99 10.58 0.4500
mode 100 10.63 0.4620
mode 101 10.66 0.4106
mode 102 10.68 0.4846
mode 103 10.78 0.3785
mode 104 10.81 0.5465
mode 105 10.82 0.2740
mode 106 10.90 0.4174

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.