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***  6B73.S187.Chol  ***

Normal Mode Analysis for ID 210720075415116992

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 4 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0169
mode 8 1.56 0.0666
mode 9 1.59 0.0466
mode 10 1.71 0.0869
mode 11 1.86 0.1181
mode 12 1.96 0.1565
mode 13 2.53 0.4593
mode 14 2.62 0.4148
mode 15 2.88 0.2625
mode 16 2.93 0.1289
mode 17 3.30 0.2319
mode 18 3.36 0.0755
mode 19 3.43 0.1618
mode 20 3.58 0.2246
mode 21 3.65 0.3730
mode 22 3.88 0.4447
mode 23 3.96 0.4280
mode 24 4.19 0.3626
mode 25 4.31 0.3396
mode 26 4.52 0.1548
mode 27 4.55 0.3777
mode 28 4.64 0.1663
mode 29 4.79 0.3717
mode 30 4.92 0.4366
mode 31 5.05 0.4797
mode 32 5.25 0.4052
mode 33 5.29 0.4757
mode 34 5.48 0.3941
mode 35 5.65 0.2873
mode 36 5.77 0.3531
mode 37 5.81 0.4824
mode 38 5.86 0.3218
mode 39 5.94 0.3004
mode 40 6.13 0.2767
mode 41 6.28 0.4119
mode 42 6.31 0.5053
mode 43 6.33 0.4396
mode 44 6.51 0.3177
mode 45 6.53 0.3164
mode 46 6.64 0.2892
mode 47 6.74 0.4765
mode 48 6.78 0.2561
mode 49 6.88 0.5235
mode 50 6.97 0.2736
mode 51 7.06 0.0599
mode 52 7.09 0.4869
mode 53 7.14 0.4646
mode 54 7.26 0.2884
mode 55 7.30 0.4580
mode 56 7.34 0.4557
mode 57 7.55 0.4365
mode 58 7.57 0.2564
mode 59 7.67 0.4167
mode 60 7.74 0.4598
mode 61 7.90 0.4165
mode 62 8.02 0.5278
mode 63 8.09 0.5031
mode 64 8.18 0.4429
mode 65 8.24 0.4285
mode 66 8.32 0.2181
mode 67 8.45 0.3447
mode 68 8.59 0.5431
mode 69 8.68 0.4857
mode 70 8.76 0.3363
mode 71 8.79 0.3713
mode 72 8.83 0.3623
mode 73 8.87 0.5030
mode 74 8.99 0.3248
mode 75 9.01 0.0117
mode 76 9.06 0.5495
mode 77 9.32 0.3883
mode 78 9.36 0.3996
mode 79 9.40 0.4966
mode 80 9.41 0.4443
mode 81 9.49 0.5298
mode 82 9.54 0.4721
mode 83 9.67 0.5112
mode 84 9.68 0.4053
mode 85 9.77 0.5114
mode 86 9.79 0.2085
mode 87 9.83 0.1356
mode 88 9.88 0.3621
mode 89 9.95 0.3772
mode 90 10.13 0.4470
mode 91 10.20 0.3468
mode 92 10.26 0.3652
mode 93 10.30 0.2821
mode 94 10.34 0.3536
mode 95 10.46 0.4428
mode 96 10.51 0.5342
mode 97 10.54 0.5177
mode 98 10.59 0.4449
mode 99 10.71 0.4690
mode 100 10.77 0.4434
mode 101 10.82 0.4446
mode 102 10.85 0.4673
mode 103 10.90 0.3111
mode 104 10.96 0.4070
mode 105 11.02 0.4104
mode 106 11.06 0.4938

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.