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***  protein spike  ***

Normal Mode Analysis for ID 2107121123546436

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.6944
mode 8 1.66 0.6137
mode 9 1.80 0.4701
mode 10 2.54 0.6476
mode 11 3.10 0.6728
mode 12 3.36 0.7390
mode 13 4.01 0.5513
mode 14 4.32 0.6484
mode 15 4.34 0.4278
mode 16 4.81 0.6670
mode 17 5.40 0.3140
mode 18 5.95 0.0939
mode 19 6.36 0.3611
mode 20 6.88 0.5093
mode 21 7.06 0.6088
mode 22 7.17 0.5881
mode 23 7.38 0.6363
mode 24 7.76 0.4642
mode 25 8.20 0.4789
mode 26 8.54 0.3209
mode 27 8.90 0.4280
mode 28 8.96 0.3809
mode 29 9.42 0.5133
mode 30 9.48 0.3770
mode 31 9.97 0.4256
mode 32 10.13 0.4699
mode 33 10.32 0.4153
mode 34 10.56 0.3838
mode 35 10.69 0.4837
mode 36 10.83 0.2763
mode 37 10.98 0.3232
mode 38 11.12 0.4593
mode 39 11.45 0.2563
mode 40 11.55 0.4226
mode 41 11.91 0.3520
mode 42 12.16 0.4883
mode 43 12.19 0.3923
mode 44 12.56 0.3867
mode 45 12.74 0.5203
mode 46 12.77 0.2218
mode 47 12.99 0.4622
mode 48 13.14 0.3286
mode 49 13.22 0.4597
mode 50 13.34 0.4158
mode 51 13.42 0.3101
mode 52 13.55 0.4748
mode 53 13.62 0.3237
mode 54 13.67 0.5611
mode 55 13.80 0.2403
mode 56 13.89 0.3156
mode 57 14.09 0.3785
mode 58 14.28 0.4271
mode 59 14.42 0.3135
mode 60 14.54 0.3921
mode 61 14.59 0.2522
mode 62 14.63 0.1971
mode 63 14.67 0.4242
mode 64 14.76 0.4087
mode 65 14.93 0.2005
mode 66 15.04 0.3953
mode 67 15.12 0.3908
mode 68 15.36 0.2544
mode 69 15.57 0.3872
mode 70 15.66 0.4907
mode 71 15.76 0.3402
mode 72 15.87 0.3269
mode 73 16.03 0.4422
mode 74 16.09 0.5031
mode 75 16.16 0.4244
mode 76 16.39 0.2960
mode 77 16.52 0.1575
mode 78 16.58 0.1735
mode 79 16.67 0.4287
mode 80 16.75 0.4122
mode 81 16.81 0.3466
mode 82 16.95 0.4187
mode 83 17.05 0.5247
mode 84 17.13 0.3834
mode 85 17.29 0.2481
mode 86 17.43 0.4423
mode 87 17.46 0.2984
mode 88 17.56 0.4977
mode 89 17.58 0.4205
mode 90 17.75 0.4734
mode 91 17.80 0.4656
mode 92 17.86 0.3994
mode 93 18.00 0.5706
mode 94 18.02 0.4035
mode 95 18.15 0.3868
mode 96 18.29 0.2968
mode 97 18.33 0.3770
mode 98 18.39 0.3149
mode 99 18.47 0.4224
mode 100 18.60 0.4383
mode 101 18.69 0.4739
mode 102 18.75 0.3500
mode 103 18.80 0.4504
mode 104 18.90 0.4137
mode 105 19.01 0.2571
mode 106 19.06 0.4836

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.