CNRS Nantes University UFIP UFIP
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.


***  noca_1  ***

Normal Mode Analysis for ID 2101080958571613

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 2 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.7590
mode 8 8740.74 0.2218
mode 9 11159.76 0.0699
mode 10 12000.94 0.0595
mode 11 13249.15 0.3062
mode 12 13579.91 0.6404
mode 13 14229.12 0.5197
mode 14 16505.74 0.2950
mode 15 17995.74 0.2688
mode 16 19023.47 0.3127
mode 17 19473.88 0.3155
mode 18 21030.15 0.3125
mode 19 21093.12 0.3468
mode 20 23347.00 0.1506
mode 21 24464.85 0.3577
mode 22 25264.76 0.6034
mode 23 25811.94 0.4579
mode 24 26051.88 0.6540
mode 25 26963.82 0.4235
mode 26 28126.56 0.7301
mode 27 29818.18 0.5017
mode 28 30694.68 0.4574
mode 29 31469.15 0.2655
mode 30 32538.41 0.6202
mode 31 33205.53 0.4477
mode 32 34604.44 0.4474
mode 33 35145.50 0.5843
mode 34 36189.29 0.4596
mode 35 37626.38 0.3650
mode 36 38084.44 0.6141
mode 37 38892.71 0.6155
mode 38 39478.38 0.6098
mode 39 41222.59 0.5157
mode 40 42152.35 0.5801
mode 41 42943.44 0.5447
mode 42 43615.12 0.5846
mode 43 44414.62 0.3570
mode 44 45615.53 0.5178
mode 45 47252.03 0.4473
mode 46 47639.00 0.4011
mode 47 48917.21 0.5924
mode 48 49682.74 0.6003
mode 49 50122.18 0.5229
mode 50 50889.62 0.1469
mode 51 51308.79 0.2926
mode 52 52439.38 0.6225
mode 53 53106.21 0.5361
mode 54 54537.03 0.5536
mode 55 55482.68 0.5405
mode 56 56349.15 0.5818
mode 57 57575.74 0.6774
mode 58 58794.06 0.5700
mode 59 59842.97 0.6116
mode 60 60756.38 0.4959
mode 61 60974.26 0.4789
mode 62 62265.38 0.4038
mode 63 63938.38 0.5975
mode 64 65014.12 0.5358
mode 65 66033.74 0.5619
mode 66 67839.44 0.5103
mode 67 68445.68 0.5067
mode 68 68728.24 0.5971
mode 69 70305.53 0.4834
mode 70 70941.00 0.4102
mode 71 71349.59 0.5254
mode 72 72617.79 0.2726
mode 73 73170.50 0.5549
mode 74 73795.12 0.4522
mode 75 74510.41 0.4347
mode 76 75584.12 0.5794
mode 77 75712.21 0.3928
mode 78 76522.91 0.5484
mode 79 77732.97 0.6794
mode 80 78522.82 0.5757
mode 81 80263.62 0.6393
mode 82 80820.85 0.6636
mode 83 81430.62 0.5747
mode 84 82048.32 0.4456
mode 85 82426.62 0.5388
mode 86 83843.68 0.4559
mode 87 84147.26 0.5418
mode 88 84328.88 0.5705
mode 89 86283.82 0.6173
mode 90 87130.79 0.3810
mode 91 87975.41 0.3086
mode 92 88714.35 0.4829
mode 93 89714.74 0.5519
mode 94 90951.15 0.6370
mode 95 91342.82 0.3176
mode 96 92325.76 0.5113
mode 97 92684.12 0.5384
mode 98 93188.97 0.5415
mode 99 94103.91 0.4309
mode 100 94881.09 0.3427
mode 101 95085.12 0.6598
mode 102 95907.56 0.5607
mode 103 97474.09 0.5543
mode 104 97651.82 0.5359
mode 105 99062.18 0.6370
mode 106 99509.06 0.4868

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.