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***  without_ca_sim2  ***

Normal Mode Analysis for ID 21010710030744224

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 2 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.3448
mode 8 1.00 0.0757
mode 9 676.88 0.0312
mode 10 4952.12 0.2732
mode 11 5678.00 0.5725
mode 12 5883.74 0.3183
mode 13 6629.74 0.2360
mode 14 7019.53 0.1722
mode 15 8015.35 0.4243
mode 16 8188.21 0.2217
mode 17 8836.18 0.7092
mode 18 9707.97 0.3555
mode 19 10947.53 0.4416
mode 20 11721.44 0.3904
mode 21 11838.35 0.4427
mode 22 13432.65 0.5938
mode 23 13729.32 0.5550
mode 24 14403.68 0.7248
mode 25 14565.65 0.5635
mode 26 15402.91 0.6166
mode 27 16244.12 0.6296
mode 28 16622.74 0.5764
mode 29 16808.82 0.6319
mode 30 18063.62 0.5100
mode 31 18983.21 0.5255
mode 32 19273.82 0.5603
mode 33 21064.06 0.3607
mode 34 21378.88 0.5919
mode 35 22136.00 0.6018
mode 36 22553.68 0.3108
mode 37 23455.97 0.5900
mode 38 23751.97 0.7084
mode 39 24898.79 0.4438
mode 40 25027.50 0.2795
mode 41 25833.68 0.4475
mode 42 27078.97 0.5482
mode 43 27862.41 0.2942
mode 44 28485.12 0.4187
mode 45 29075.21 0.3681
mode 46 29866.03 0.5463
mode 47 30759.41 0.6455
mode 48 31782.00 0.5794
mode 49 32334.03 0.5236
mode 50 33648.00 0.6176
mode 51 34545.44 0.3595
mode 52 35463.32 0.6859
mode 53 36539.91 0.5697
mode 54 36762.56 0.2997
mode 55 37531.38 0.6572
mode 56 38603.15 0.6178
mode 57 39465.47 0.6388
mode 58 40397.79 0.4829
mode 59 41049.03 0.5669
mode 60 42537.76 0.3437
mode 61 42693.32 0.5628
mode 62 43626.82 0.6238
mode 63 44928.35 0.5992
mode 64 46347.56 0.5698
mode 65 46927.15 0.5741
mode 66 47144.00 0.4935
mode 67 48245.35 0.4144
mode 68 48687.32 0.4097
mode 69 50112.00 0.5906
mode 70 50809.38 0.5557
mode 71 51842.74 0.2414
mode 72 52029.32 0.5492
mode 73 54246.35 0.3933
mode 74 54611.79 0.5402
mode 75 55160.00 0.5402
mode 76 55876.53 0.1494
mode 77 56781.91 0.3719
mode 78 57327.18 0.4358
mode 79 57699.59 0.5499
mode 80 58104.76 0.5416
mode 81 58707.26 0.5223
mode 82 60225.24 0.4165
mode 83 60613.53 0.5206
mode 84 61407.65 0.6447
mode 85 62134.21 0.3047
mode 86 62330.88 0.4210
mode 87 62836.12 0.4463
mode 88 63224.50 0.6583
mode 89 64201.06 0.4712
mode 90 64967.03 0.5368
mode 91 65529.79 0.4894
mode 92 66388.03 0.6030
mode 93 66495.50 0.3309
mode 94 66938.85 0.6372
mode 95 67454.94 0.6355
mode 96 68869.06 0.5876
mode 97 69326.68 0.5534
mode 98 69620.29 0.5864
mode 99 70058.44 0.5949
mode 100 71206.50 0.5162
mode 101 72687.97 0.4649
mode 102 73030.97 0.5542
mode 103 73608.29 0.5819
mode 104 74208.62 0.5606
mode 105 75327.26 0.6119
mode 106 75671.76 0.3964

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.