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***  TRANSFERASE 30-MAR-05 1Z8D  ***

Normal Mode Analysis for ID 2101020217429084

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 5 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0130
mode 8 1.55 0.0219
mode 9 4.65 0.0121
mode 10 11.60 0.0160
mode 11 16.85 0.0162
mode 12 19.63 0.0150
mode 13 21.48 0.1248
mode 14 22.35 0.3800
mode 15 24.37 0.2783
mode 16 25.69 0.3893
mode 17 28.24 0.0906
mode 18 28.73 0.3654
mode 19 31.14 0.4302
mode 20 36.44 0.1872
mode 21 38.58 0.4548
mode 22 43.19 0.2759
mode 23 43.71 0.5706
mode 24 44.53 0.5703
mode 25 44.96 0.3923
mode 26 45.97 0.0752
mode 27 48.15 0.3563
mode 28 49.28 0.1963
mode 29 50.05 0.2264
mode 30 51.87 0.6256
mode 31 52.49 0.4888
mode 32 55.39 0.4040
mode 33 55.63 0.5018
mode 34 57.05 0.3972
mode 35 58.35 0.3926
mode 36 59.85 0.1597
mode 37 60.56 0.2101
mode 38 61.87 0.4177
mode 39 63.18 0.5163
mode 40 64.18 0.3017
mode 41 64.40 0.4615
mode 42 65.87 0.2399
mode 43 66.39 0.0976
mode 44 66.98 0.4775
mode 45 67.25 0.3435
mode 46 68.71 0.3022
mode 47 69.23 0.3097
mode 48 70.27 0.3162
mode 49 71.00 0.2571
mode 50 71.40 0.2881
mode 51 71.83 0.3458
mode 52 72.40 0.3893
mode 53 72.99 0.1397
mode 54 74.52 0.4515
mode 55 74.76 0.4100
mode 56 76.78 0.4709
mode 57 77.60 0.3276
mode 58 78.53 0.4861
mode 59 79.56 0.4582
mode 60 79.85 0.5148
mode 61 80.20 0.0310
mode 62 81.47 0.2698
mode 63 81.87 0.3011
mode 64 82.65 0.5491
mode 65 83.69 0.4623
mode 66 84.03 0.5680
mode 67 85.41 0.4987
mode 68 85.76 0.3957
mode 69 87.10 0.3535
mode 70 87.89 0.4302
mode 71 88.71 0.5139
mode 72 89.53 0.3862
mode 73 89.80 0.5768
mode 74 90.79 0.5406
mode 75 91.21 0.4460
mode 76 92.62 0.5123
mode 77 93.13 0.4884
mode 78 93.59 0.5851
mode 79 94.18 0.4145
mode 80 94.40 0.3140
mode 81 94.92 0.2749
mode 82 95.52 0.4925
mode 83 96.18 0.3149
mode 84 96.61 0.1416
mode 85 97.13 0.1543
mode 86 98.40 0.4147
mode 87 98.54 0.4284
mode 88 98.92 0.4958
mode 89 99.35 0.5081
mode 90 100.46 0.4492
mode 91 100.63 0.5299
mode 92 101.39 0.3290
mode 93 102.39 0.5363
mode 94 102.95 0.5430
mode 95 103.24 0.3993
mode 96 103.63 0.2936
mode 97 104.60 0.3130
mode 98 105.71 0.4821
mode 99 105.73 0.2973
mode 100 106.39 0.3990
mode 101 107.35 0.4774
mode 102 108.00 0.3897
mode 103 108.55 0.5129
mode 104 109.10 0.3763
mode 105 109.22 0.5183
mode 106 109.69 0.2107

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.